Apply new cmake-format target.

SC-SGS · Nov 26, 2024 · f51494a · f51494a
1 parent 5f35a69
commit f51494a
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Showing 48 changed files with 864 additions and 782 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
diff --git a/bindings/CMakeLists.txt b/bindings/CMakeLists.txt
@@ -1,20 +1,26 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
 include(CMakeDependentOption)
 
 list(APPEND CMAKE_MESSAGE_INDENT "Bindings:  ")
 
 # enable Python langauge bindings
-cmake_dependent_option(PLSSVM_ENABLE_PYTHON_BINDINGS "Build langauge bindings for Python." ON "PLSSVM_ENABLE_LANGUAGE_BINDINGS" OFF)
+cmake_dependent_option(
+    PLSSVM_ENABLE_PYTHON_BINDINGS
+    "Build langauge bindings for Python."
+    ON
+    "PLSSVM_ENABLE_LANGUAGE_BINDINGS"
+    OFF
+)
 if (PLSSVM_ENABLE_PYTHON_BINDINGS)
     add_subdirectory(Python)
 endif ()
 
 # explicitly update install targets in parent scope
 set(PLSSVM_TARGETS_TO_INSTALL "${PLSSVM_TARGETS_TO_INSTALL}" PARENT_SCOPE)
 
-list(POP_BACK CMAKE_MESSAGE_INDENT)
+list(POP_BACK CMAKE_MESSAGE_INDENT)
diff --git a/bindings/Python/CMakeLists.txt b/bindings/Python/CMakeLists.txt
@@ -1,7 +1,7 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
 include(${PROJECT_SOURCE_DIR}/cmake/utility_macros.cmake)
@@ -10,33 +10,29 @@ message(STATUS "Building Python language bindings for PLSSVM.")
 
 find_package(Python COMPONENTS Interpreter Development)
 
-## try finding pybind11
+# try finding pybind11
 set(PLSSVM_pybind11_VERSION v2.13.3)
 find_package(pybind11 2.13.3 QUIET)
 if (pybind11_FOUND)
     message(STATUS "Found package pybind11.")
 else ()
     message(STATUS "Couldn't find package pybind11. Building version ${PLSSVM_pybind11_VERSION} from source.")
     # fetch pybind11 library for creating Python bindings
-    FetchContent_Declare(pybind11
-                         GIT_REPOSITORY https://github.com/pybind/pybind11.git
-                         GIT_TAG ${PLSSVM_pybind11_VERSION}
-                         GIT_SHALLOW TRUE
-                         QUIET
+    FetchContent_Declare(
+        pybind11
+        GIT_REPOSITORY https://github.com/pybind/pybind11.git
+        GIT_TAG ${PLSSVM_pybind11_VERSION}
+        GIT_SHALLOW TRUE
+        QUIET
     )
     FetchContent_MakeAvailable(pybind11)
-    target_include_directories(${PLSSVM_BASE_LIBRARY_NAME} PUBLIC
-                               $<BUILD_INTERFACE:${pybind11_SOURCE_DIR}/include>
-                               $<INSTALL_INTERFACE:include>
-    )
+    target_include_directories(${PLSSVM_BASE_LIBRARY_NAME} PUBLIC $<BUILD_INTERFACE:${pybind11_SOURCE_DIR}/include> $<INSTALL_INTERFACE:include>)
 endif ()
 
 # set source files that are always used
 set(PLSSVM_PYTHON_BINDINGS_SOURCES
     ${CMAKE_CURRENT_LIST_DIR}/exceptions/exceptions.cpp
-
     ${CMAKE_CURRENT_LIST_DIR}/version/version.cpp
-
     ${CMAKE_CURRENT_LIST_DIR}/backend_types.cpp
     ${CMAKE_CURRENT_LIST_DIR}/classification_types.cpp
     ${CMAKE_CURRENT_LIST_DIR}/csvm.cpp
@@ -51,9 +47,7 @@ set(PLSSVM_PYTHON_BINDINGS_SOURCES
     ${CMAKE_CURRENT_LIST_DIR}/solver_types.cpp
     ${CMAKE_CURRENT_LIST_DIR}/target_platforms.cpp
     ${CMAKE_CURRENT_LIST_DIR}/verbosity_levels.cpp
-
     ${CMAKE_CURRENT_LIST_DIR}/sklearn.cpp
-
     ${CMAKE_CURRENT_LIST_DIR}/main.cpp
 )
 
@@ -69,12 +63,15 @@ if (TARGET ${PLSSVM_OPENMP_BACKEND_LIBRARY_NAME})
     list(APPEND PLSSVM_PYTHON_BINDINGS_SOURCES ${CMAKE_CURRENT_LIST_DIR}/backends/openmp_csvm.cpp)
 endif ()
 if (TARGET ${PLSSVM_STDPAR_BACKEND_LIBRARY_NAME})
-    
+
     # AdaptiveCpp stdpar only support on the CPU when using our Python bindings
     if (PLSSVM_STDPAR_BACKEND STREQUAL "ACPP" AND (DEFINED PLSSVM_NVIDIA_TARGET_ARCHS OR DEFINED PLSSVM_AMD_TARGET_ARCHS OR DEFINED PLSSVM_INTEL_TARGET_ARCHS))
-        message(FATAL_ERROR "The stdpar implementation using AdaptiveCpp isn't currently supported in the Python bindings when targeting something different than the CPU!")
+        message(
+            FATAL_ERROR
+                "The stdpar implementation using AdaptiveCpp isn't currently supported in the Python bindings when targeting something different than the CPU!"
+        )
     endif ()
-    
+
     list(APPEND PLSSVM_PYTHON_BINDINGS_SOURCES ${CMAKE_CURRENT_LIST_DIR}/backends/stdpar_csvm.cpp)
 endif ()
 if (TARGET ${PLSSVM_CUDA_BACKEND_LIBRARY_NAME})
@@ -101,16 +98,23 @@ set(PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME plssvm)
 pybind11_add_module(${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME} ${PLSSVM_PYTHON_BINDINGS_SOURCES})
 
 # set default label type
-set(PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE "bool;char;signed char;unsigned char;short;unsigned short;int;unsigned int;long;unsigned long;long long;unsigned long long;float;double;long double;std::string")
+set(PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE
+    "bool;char;signed char;unsigned char;short;unsigned short;int;unsigned int;long;unsigned long;long long;unsigned long long;float;double;long double;std::string"
+)
 set(PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE "std::string" CACHE STRING "The preferred type of the labels for the Python bindings.")
 set_property(CACHE PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE PROPERTY STRINGS ${PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE})
 if (NOT "${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE}" IN_LIST PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE)
-    message(FATAL_ERROR "The provided label_type \"${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE}\" is not one of the allowed values: \"${PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE}\"")
+    message(
+        FATAL_ERROR
+            "The provided label_type \"${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE}\" is not one of the allowed values: \"${PLSSVM_PYTHON_BINDINGS_POSSIBLE_LABEL_TYPE}\""
+    )
 endif ()
 message(STATUS "The preferred label_type for the Python bindings is \"${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE}\".")
 
 # add necessary compile definitions for the default real_type and label_type
-target_compile_definitions(${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME} PRIVATE PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE=${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE})
+target_compile_definitions(
+    ${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME} PRIVATE PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE=${PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE}
+)
 if (PLSSVM_PYTHON_BINDINGS_PREFERRED_LABEL_TYPE STREQUAL "std::string")
     target_compile_definitions(${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME} PRIVATE PLSSVM_PYTHON_BINDINGS_LABEL_TYPE_IS_STRING)
 endif ()
@@ -125,4 +129,4 @@ target_compile_options(${PLSSVM_BASE_LIBRARY_NAME} PUBLIC $<$<COMPILE_LANG_AND_I
 target_compile_options(${PLSSVM_BASE_LIBRARY_NAME} PUBLIC -fPIC)
 
 # append pybind11 bindings library to installed targets
-append_local_and_parent(PLSSVM_TARGETS_TO_INSTALL ${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME})
+append_local_and_parent(PLSSVM_TARGETS_TO_INSTALL ${PLSSVM_PYTHON_BINDINGS_LIBRARY_NAME})
diff --git a/cmake/add_coverage_build_type.cmake b/cmake/add_coverage_build_type.cmake
@@ -1,35 +1,30 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
-## add new coverage build type
-SET(CMAKE_CXX_FLAGS_COVERAGE
-    "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage"
-    CACHE STRING "Flags used by the C++ compiler during coverage builds."
-    FORCE)
-SET(CMAKE_C_FLAGS_COVERAGE
-    "${CMAKE_C_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage"
-    CACHE STRING "Flags used by the C compiler during coverage builds."
-    FORCE)
-SET(CMAKE_EXE_LINKER_FLAGS_COVERAGE
-    "${CMAKE_EXE_LINKER_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -lgcov"
-    CACHE STRING "Flags used for linking binaries during coverage builds."
-    FORCE)
-SET(CMAKE_SHARED_LINKER_FLAGS_COVERAGE
-    "${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -lgcov"
-    CACHE STRING "Flags used by the shared libraries linker during coverage builds."
-    FORCE)
-MARK_AS_ADVANCED(
-        CMAKE_CXX_FLAGS_COVERAGE
-        CMAKE_C_FLAGS_COVERAGE
-        CMAKE_EXE_LINKER_FLAGS_COVERAGE
-        CMAKE_SHARED_LINKER_FLAGS_COVERAGE)
+# add new coverage build type
+set(CMAKE_CXX_FLAGS_COVERAGE "${CMAKE_CXX_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage" CACHE STRING "Flags used by the C++ compiler during coverage builds."
+                                                                                             FORCE
+)
+set(CMAKE_C_FLAGS_COVERAGE "${CMAKE_C_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage" CACHE STRING "Flags used by the C compiler during coverage builds." FORCE)
+set(CMAKE_EXE_LINKER_FLAGS_COVERAGE "${CMAKE_EXE_LINKER_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -lgcov"
+    CACHE STRING "Flags used for linking binaries during coverage builds." FORCE
+)
+set(CMAKE_SHARED_LINKER_FLAGS_COVERAGE "${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -fprofile-arcs -ftest-coverage -lgcov"
+    CACHE STRING "Flags used by the shared libraries linker during coverage builds." FORCE
+)
+mark_as_advanced(CMAKE_CXX_FLAGS_COVERAGE CMAKE_C_FLAGS_COVERAGE CMAKE_EXE_LINKER_FLAGS_COVERAGE CMAKE_SHARED_LINKER_FLAGS_COVERAGE)
 
 # update the documentation string of CMAKE_BUILD_TYPE for GUIs
-set(CMAKE_BUILD_TYPE "${CMAKE_BUILD_TYPE}" CACHE STRING
-    "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel Coverage."
-    FORCE)
-set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS
-             "Debug" "Release" "RelWithDebInfo" "MinSizeRel" "Coverage")
+set(CMAKE_BUILD_TYPE "${CMAKE_BUILD_TYPE}" CACHE STRING "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel Coverage." FORCE)
+set_property(
+    CACHE CMAKE_BUILD_TYPE
+    PROPERTY STRINGS
+             "Debug"
+             "Release"
+             "RelWithDebInfo"
+             "MinSizeRel"
+             "Coverage"
+)
diff --git a/cmake/assemble_summary_string.cmake b/cmake/assemble_summary_string.cmake
@@ -1,10 +1,10 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
-function(assemble_summary_string out_var)
+function (assemble_summary_string out_var)
     set(PLSSVM_SUMMARY_STRING_ASSEMBLE "")
     if (DEFINED PLSSVM_CPU_TARGET_ARCHS)
         # add cpu platform
@@ -29,4 +29,4 @@ function(assemble_summary_string out_var)
     # remove last comma
     string(REGEX REPLACE ",$" "" PLSSVM_SUMMARY_STRING_ASSEMBLE "${PLSSVM_SUMMARY_STRING_ASSEMBLE}")
     set(${out_var} "${PLSSVM_SUMMARY_STRING_ASSEMBLE}" PARENT_SCOPE)
-endfunction()
+endfunction ()
diff --git a/cmake/check_python_libs.cmake b/cmake/check_python_libs.cmake
@@ -1,24 +1,20 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
-function(check_python_libs required_libraries error_string)
+function (check_python_libs required_libraries error_string)
     foreach (PLSSVM_PYTHON_LIB ${required_libraries})
         # search for Python package
-        execute_process(
-                COMMAND ${Python3_EXECUTABLE} -c "import ${PLSSVM_PYTHON_LIB}"
-                RESULT_VARIABLE PLSSVM_PYTHON_LIB_EXIT_CODE
-                OUTPUT_QUIET)
-
+        execute_process(COMMAND ${Python3_EXECUTABLE} -c "import ${PLSSVM_PYTHON_LIB}" RESULT_VARIABLE PLSSVM_PYTHON_LIB_EXIT_CODE OUTPUT_QUIET)
+
         # emit error if package couldn't be found
         if (NOT ${PLSSVM_PYTHON_LIB_EXIT_CODE} EQUAL 0)
-            message(FATAL_ERROR
-                    "The '${PLSSVM_PYTHON_LIB}' Python3 package is not installed. "
-                    "Please install it using the following command: '${Python3_EXECUTABLE} -m pip install ${PLSSVM_PYTHON_LIB}'\n "
-                    "${error_string}"
+            message(FATAL_ERROR "The '${PLSSVM_PYTHON_LIB}' Python3 package is not installed. "
+                                "Please install it using the following command: '${Python3_EXECUTABLE} -m pip install ${PLSSVM_PYTHON_LIB}'\n "
+                                "${error_string}"
             )
         endif ()
     endforeach ()
-endfunction()
+endfunction ()
diff --git a/cmake/create_documentation_shortcut.cmake b/cmake/create_documentation_shortcut.cmake
@@ -1,7 +1,7 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
-file(WRITE documentation.html "<meta http-equiv=\"REFRESH\" content=\"0;URL=html/index.html\">")
+file(WRITE documentation.html "<meta http-equiv=\"REFRESH\" content=\"0;URL=html/index.html\">")
diff --git a/cmake/delete_coverage_files.cmake b/cmake/delete_coverage_files.cmake
@@ -1,10 +1,10 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
 file(GLOB_RECURSE PLSSVM_COVERAGE_GCDA_FILES ${CMAKE_BINARY_DIR}/*.gcda)
 file(REMOVE ${PLSSVM_COVERAGE_GCDA_FILES})
 file(GLOB_RECURSE PLSSVM_COVERAGE_GCNO_FILES ${CMAKE_BINARY_DIR}/*.gcno)
-file(REMOVE ${PLSSVM_COVERAGE_GCNO_FILES})
+file(REMOVE ${PLSSVM_COVERAGE_GCNO_FILES})
diff --git a/cmake/discover_tests_with_death_test_filter.cmake b/cmake/discover_tests_with_death_test_filter.cmake
@@ -1,29 +1,28 @@
-## Authors: Alexander Van Craen, Marcel Breyer
-## Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
-## License: This file is part of the PLSSVM project which is released under the MIT license.
-##          See the LICENSE.md file in the project root for full license information.
+# Authors: Alexander Van Craen, Marcel Breyer
+# Copyright (C): 2018-today The PLSSVM project - All Rights Reserved
+# License: This file is part of the PLSSVM project which is released under the MIT license.
+#          See the LICENSE.md file in the project root for full license information.
 ########################################################################################################################
 
-function(discover_tests_with_death_test_filter test_executable_name)
+function (discover_tests_with_death_test_filter test_executable_name)
     if (PLSSVM_ENABLE_DEATH_TESTS)
         # assertions are enabled -> enable Google death tests
-        gtest_discover_tests(${test_executable_name} PROPERTIES
-                             DISCOVERY_TIMEOUT 600
-                             DISCOVERY_MODE PRE_TEST
-                             WORKING_DIRECTORY $<TARGET_FILE_DIR:${test_executable_name}>)
+        gtest_discover_tests(
+            ${test_executable_name} PROPERTIES DISCOVERY_TIMEOUT 600 DISCOVERY_MODE PRE_TEST WORKING_DIRECTORY $<TARGET_FILE_DIR:${test_executable_name}>
+        )
     else ()
         # assertions are disabled -> disable Google death tests
-        gtest_discover_tests(${test_executable_name} TEST_FILTER -*DeathTest* PROPERTIES
-                             DISCOVERY_TIMEOUT 600
-                             DISCOVERY_MODE PRE_TEST
-                             WORKING_DIRECTORY $<TARGET_FILE_DIR:${test_executable_name}>)
+        gtest_discover_tests(
+            ${test_executable_name} TEST_FILTER -*DeathTest* PROPERTIES DISCOVERY_TIMEOUT 600 DISCOVERY_MODE PRE_TEST
+            WORKING_DIRECTORY $<TARGET_FILE_DIR:${test_executable_name}>
+        )
     endif ()
     if (WIN32)
         add_custom_command(
-                TARGET ${test_executable_name}
-                POST_BUILD
-                COMMAND ${CMAKE_COMMAND} -E copy $<TARGET_RUNTIME_DLLS:${test_executable_name}> $<TARGET_FILE_DIR:${test_executable_name}>
-                COMMAND_EXPAND_LISTS
+            TARGET ${test_executable_name}
+            POST_BUILD
+            COMMAND ${CMAKE_COMMAND} -E copy $<TARGET_RUNTIME_DLLS:${test_executable_name}> $<TARGET_FILE_DIR:${test_executable_name}>
+            COMMAND_EXPAND_LISTS
         )
     endif ()
-endfunction()
+endfunction ()
diff --git a/cmake/git_watcher.cmake b/cmake/git_watcher.cmake
@@ -359,4 +359,4 @@ endfunction()
 # And off we go...
 Main()
 
-# cmake-format: on
+# cmake-format: on