chore: try turning off pandoc checking in GHA

RubD · Feb 28, 2024 · b2cbb98 · b2cbb98
1 parent e921738
commit b2cbb98
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Showing 2 changed files with 5 additions and 19 deletions.
diff --git a/.github/workflows/covr.yml b/.github/workflows/covr.yml
@@ -30,29 +30,23 @@ jobs:
         with:
           use-public-rspm: true
 
-      - name: Set up dependencies (GiottoData)
-        run: |
-          suppressWarnings({
-            install.packages("remotes")
-            remotes::install_github('drieslab/GiottoData', build = FALSE)
-          })
-        shell: Rscript {0}
-
       - name: Set up dependencies (general)
         uses: r-lib/actions/setup-r-dependencies@v2
         env:
           _R_CHECK_FORCE_SUGGESTS: false
           _R_CHECK_RD_XREFS: false
         with:
           dependencies: '"hard"' # do not use suggested dependencies
+          install-pandoc: false
           extra-packages: |
             any::rcmdcheck
             any::testthat
             any::rlang
             any::R.utils
             any::covr
+            any::remotes
             any::hdf5r
-            GiottoData=?ignore
+            github::drieslab/GiottoData
           needs: coverage
 
       - name: Generate coverage report

diff --git a/.github/workflows/main_check.yaml b/.github/workflows/main_check.yaml
@@ -51,32 +51,24 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - name: Set up dependencies (GiottoData)
-        run: |
-          suppressWarnings({
-            install.packages("remotes")
-            remotes::install_github("drieslab/GiottoData", build = FALSE)
-          })
-        shell: Rscript {0}
-
       - name: Set up dependencies (general)
         uses: r-lib/actions/setup-r-dependencies@v2
         env:
           _R_CHECK_FORCE_SUGGESTS: false
           _R_CHECK_RD_XREFS: false
         with:
           dependencies: '"hard"' # do not use suggested dependencies
+          install-pandoc: false
           extra-packages: |
             any::rcmdcheck
             any::testthat
             any::hdf5r
             any::rlang
             any::R.utils
             any::remotes
-            any::covr
             any::spdep
             any::future.apply
-            GiottoData=?ignore
+            github::drieslab/GiottoData
 
       - name: Test python env install
         run: |