Merge pull request drieslab#966 from josschavezf/suite_dev

update examples and updates following rcmdcheck
RubD · Jun 3, 2024 · 8a6d25a · 8a6d25a
2 parents 9937cc2 + c86b6c9
commit 8a6d25a
Show file tree

Hide file tree

Showing 132 changed files with 8,071 additions and 5,855 deletions.
diff --git a/R/auxiliary_giotto.R b/R/auxiliary_giotto.R
diff --git a/R/cell_segmentation.R b/R/cell_segmentation.R
@@ -16,14 +16,15 @@
 #' of the tile: sx (start x), ex (end x), sy, and ey.
 #'
 #' @export
-doCellSegmentation <- function(raster_img,
-    folder_path,
-    reduce_resolution = 4,
-    overlapping_pixels = 50,
-    python_path = NULL) {
+doCellSegmentation <- function(
+        raster_img,
+        folder_path,
+        reduce_resolution = 4,
+        overlapping_pixels = 50,
+        python_path = NULL) {
     package_check("deepcell", repository = "pip")
     package_check("PIL", repository = "pip")
-    
+
     # prepare python path and segmentation script
     reticulate::use_python(required = TRUE, python = python_path)
     python_segmentation_function <- system.file("python",