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Merge pull request #911 from josschavezf/suite #3

Merge pull request #911 from josschavezf/suite

Merge pull request #911 from josschavezf/suite #3

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
name: pkgdown
on:
push:
branches: [suite]
pull_request:
branches: [suite]
release:
types: [published]
workflow_dispatch:
jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- name: Checkout repo for workflow access
uses: actions/checkout@v3
- name: Setup pandoc
uses: r-lib/actions/setup-pandoc@v2
- name: Setup R environment
uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- name: Set up dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
dependencies: '"hard"' # do not use suggested dependencies
extra-packages: any::pkgdown, local::., any::kableExtra, any::ggspavis, any::pheatmap, any::scater, any::STexampleData, any::scran, any::ComplexHeatmap
needs: website
- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}
- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs