update vignettes

RoseYuan · Dec 1, 2024 · be64a4c · be64a4c
1 parent bbd614e
commit be64a4c
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Showing 84 changed files with 1,856 additions and 354 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,2 +1,5 @@
 ^data-raw$
 ^\.github$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
diff --git a/.gitignore b/.gitignore
@@ -24,6 +24,9 @@
 # produced vignettes
 vignettes/*.html
 vignettes/*.pdf
+## not ready yet
+vignettes/fuzzy_metrics.Rmd 
+
 
 # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
 .httr-oauth
@@ -39,8 +42,6 @@ vignettes/*.pdf
 # R Environment Variables
 .Renviron
 
-# pkgdown site
-docs/
 
 # translation temp files
 po/*~

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -11,6 +11,13 @@ authors:
   Siyuan Luo:
     href: https://roseyuan.github.io/
 
+articles:
+- title: Articles
+  navbar: ~
+  contents:
+  - table
+  - SpatialExperiment
+
 reference:
 - title: Main functions
   desc: >
@@ -32,6 +39,7 @@ reference:
 - subtitle: Fuzzy metrics
   contents:
   - fuzzyHardMetrics
+  - fuzzyHardMetrics2
   - fuzzyPartitionMetrics
 - subtitle: Internal metrics for spatial domain detection
   contents:

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/SpatialExperiment.html b/docs/articles/SpatialExperiment.html
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diff --git a/docs/articles/index.html b/docs/articles/index.html
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