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more informative update print
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Robin-Rounthwaite committed Apr 6, 2024
1 parent bd339c7 commit c5835e7
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions src/subcommand/0_normalize_main.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -915,27 +915,27 @@ int main_normalize(int argc, char **argv) {
{
//then we must read from the files --original_gbwt and --original_gbwt_graph to do the desegregation.
// gbwt
cerr << "loading original gbwt" << endl;
cerr << "loading original gbwt (from -G)" << endl;
ifstream gbwt_stream_2;
gbwt_stream_2.open(original_gbwt_file);
gbwt = vg::io::VPKG::load_one<gbwt::GBWT>(gbwt_stream_2);

// gbwt graph
cerr << "loading original gbwt graph" << endl;
cerr << "loading original gbwt graph (from -R)" << endl;
gbwt_graph = vg::io::VPKG::load_one<gbwtgraph::GBWTGraph>(original_gbwt_graph_file);
gbwt_graph->set_gbwt(*gbwt);

}
else
{
// gbwt
cerr << "loading original gbwt" << endl;
cerr << "reloading original gbwt" << endl;
ifstream gbwt_stream_2;
gbwt_stream_2.open(gbwt_file);
gbwt = vg::io::VPKG::load_one<gbwt::GBWT>(gbwt_stream_2);

// gbwt graph
cerr << "loading original gbwt graph" << endl;
cerr << "reloading original gbwt graph" << endl;
gbwt_graph = vg::io::VPKG::load_one<gbwtgraph::GBWTGraph>(gbwt_graph_file);
gbwt_graph->set_gbwt(*gbwt);
}
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