Transcriptomic insights into mechanisms of early seed maturation in garden pea (Pisum sativum L.)

A repository with working codes and supplementary materials for Cells (MDPI) 2020 paper (DOI: 10.3390/cells9030779)

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
Pea_script_Python.ipynb		Pea_script_Python.ipynb
README.md		README.md
bbduk_ext_script.sh		bbduk_ext_script.sh
bbduk_script_pea.sh		bbduk_script_pea.sh
busco_script.sh		busco_script.sh
catch_missing.py		catch_missing.py
cdhit_script.py		cdhit_script.py
download_BLAST_names.py		download_BLAST_names.py
ext_bowtie2_script.sh		ext_bowtie2_script.sh
extract_annotations.py		extract_annotations.py
fastqc_trimming.sh		fastqc_trimming.sh
filter_SupTrans_gtf.py		filter_SupTrans_gtf.py
filter_combined_assembly.py		filter_combined_assembly.py
filter_gff_for_snpEff.py		filter_gff_for_snpEff.py
filter_script.py		filter_script.py
find_by_length.py		find_by_length.py
for_kallisto.sh		for_kallisto.sh
kallisto_ext.sh		kallisto_ext.sh
kallisto_script.sh		kallisto_script.sh
kallisto_subsamples_ext.sh		kallisto_subsamples_ext.sh
mean_length.py		mean_length.py
mean_lengths_local.py		mean_lengths_local.py
pea_markdown_notebook.Rmd		pea_markdown_notebook.Rmd
pea_markdown_notebook.html		pea_markdown_notebook.html
rcorrector_script.sh		rcorrector_script.sh
rm.sh		rm.sh
subsampling_script.sh		subsampling_script.sh
substitute_contigs.py		substitute_contigs.py

Provide feedback