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Arioc v1.42
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@RWilton RWilton released this 23 Oct 04:35
· 43 commits to master since this release
v1.42
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Notes for Arioc v1.42:

The current build is v1.42.2963 (30 November 2020).

New features

  • AriocP: added TLEN distribution output as a space-separated list that can be copied and pasted for visualization or other analysis:
    TLEN distribution
  • AriocP: added performance metrics for TLEN skewness and fraction of discordant mappings due to out-of-range TLEN.
  • AriocU, AriocP: added performance metrics for MAPQ distribution.
  • AriocU, AriocP: added xmClip parameter to control inclusion/exclusion of soft-clipped read sequence regions for BS-seq methylation context mapping (SAM XM field).
  • AriocU, AriocP: implemented more stringent unduplication on reported "rejected" mappings.

Bug fixes

  • AriocU, AriocP: incorrect POS reported for certain reads that straddle the origin of a reference sequence with circular topology
  • AriocU, AriocP: incorrect XM reported for soft-clipped reads whose highest-scoring alignments map the reverse complement of the read sequence to the reverse complement of the reference ("non-directional" BS-seq alignments)

Downloads

file content
Arioc.RQA.142.zip Linux examples
Arioc.w.142.zip Windows source code
Arioc.x.142.zip Linux source code
AriocSetup.msi Windows binaries and examples
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