Fix many things reported by JET

src/ProtocolZoo/ProtocolZoo.jl

@@ -24,7 +24,7 @@ export
 
 abstract type AbstractProtocol end
 
-get_time_tracker(prot::AbstractProtocol) = prot.sim
+get_time_tracker(prot::AbstractProtocol) = prot.sim::Simulation
 
 Process(prot::AbstractProtocol, args...; kwargs...) = Process((e,a...;k...)->prot(a...;k...), get_time_tracker(prot), args...; kwargs...)
 
@@ -204,15 +204,19 @@ end
     while rounds != 0
         isentangled = !isnothing(query(prot.net[prot.nodeA], EntanglementCounterpart, prot.nodeB, ❓; assigned=true))
         margin = isentangled ? prot.margin : prot.hardmargin
-        a = findfreeslot(prot.net[prot.nodeA]; randomize=prot.randomize, margin=margin)
-        b = findfreeslot(prot.net[prot.nodeB]; randomize=prot.randomize, margin=margin)
+        a_ = findfreeslot(prot.net[prot.nodeA]; randomize=prot.randomize, margin=margin)
+        b_ = findfreeslot(prot.net[prot.nodeB]; randomize=prot.randomize, margin=margin)
 
-        if isnothing(a) || isnothing(b)
+        if isnothing(a_) || isnothing(b_)
             isnothing(prot.retry_lock_time) && error("We do not yet support waiting on register to make qubits available") # TODO
-            @debug "EntanglerProt between $(prot.nodeA) and $(prot.nodeB)|round $(round): Failed to find free slots. \nGot:\n1. \t $a \n2.\t $b \n retrying..."
+            @debug "EntanglerProt between $(prot.nodeA) and $(prot.nodeB)|round $(round): Failed to find free slots. \nGot:\n1. \t $a_ \n2.\t $b_ \n retrying..."
             @yield timeout(prot.sim, prot.retry_lock_time)
             continue
         end
+        # we are now certain that a_ and b_ are not nothing. The compiler is not smart enough to figure this out
+        # on its own, so we need to tell it explicitly. A new variable name is needed due to @resumable.
+        a = a_::RegRef
+        b = b_::RegRef
 
         @yield lock(a) & lock(b) # this yield is expected to return immediately
 

src/ProtocolZoo/swapping.jl

@@ -66,12 +66,14 @@ end
     rounds = prot.rounds
     round = 1
     while rounds != 0
-        qubit_pair = findswapablequbits(prot.net, prot.node, prot.nodeL, prot.nodeH, prot.chooseL, prot.chooseH; agelimit=prot.agelimit)
-        if isnothing(qubit_pair)
+        qubit_pair_ = findswapablequbits(prot.net, prot.node, prot.nodeL, prot.nodeH, prot.chooseL, prot.chooseH; agelimit=prot.agelimit)
+        if isnothing(qubit_pair_)
             isnothing(prot.retry_lock_time) && error("We do not yet support waiting on register to make qubits available") # TODO
             @yield timeout(prot.sim, prot.retry_lock_time)
             continue
         end
+        # The compiler is not smart enough to figure out that qubit_pair_ is not nothing, so we need to tell it explicitly. A new variable name is needed due to @resumable.
+        qubit_pair = qubit_pair_::NTuple{2, Base.NamedTuple{(:slot, :id, :tag), Base.Tuple{RegRef, Int128, Tag}}} # TODO: replace by `NTuple{2, @NamedTuple{slot::RegRef, id::Int128, tag::Tag}}` once https://github.com/JuliaDynamics/ResumableFunctions.jl/issues/104 is resolved
 
         (q1, id1, tag1) = qubit_pair[1].slot, qubit_pair[1].id, qubit_pair[1].tag
         (q2, id2, tag2) = qubit_pair[2].slot, qubit_pair[2].id, qubit_pair[2].tag

src/backends/clifford/should_upstream.jl

@@ -3,7 +3,7 @@
     gates # TODO constructor that flattens nested QCGateSequence
 end
 function QuantumClifford.apply!(state::QuantumClifford.MixedDestabilizer, gseq::QCGateSequence, indices)
-    for g in gseq[end:-1:begin]
+    for g in gseq.gates[end:-1:begin]
         apply_popindex!(state, g, indices)
     end
     state

src/baseops/traceout.jl

@@ -66,7 +66,7 @@
 function project_traceout!(reg::Register, i::Int, basis; time=nothing)
     project_traceout!(identity, reg, i, basis; time=time)
 end
-project_traceout!(r::RegRef, basis; time=nothing) = project_traceout!(r.reg, r.idx, basis; time=nothing)
+project_traceout!(r::RegRef, basis; time=nothing) = project_traceout!(r.reg, r.idx, basis; time)
 
 function project_traceout!(f, reg::Register, i::Int, basis; time=nothing)
     !isnothing(time) && uptotime!([reg], [i], time)
@@ -79,4 +79,4 @@
     removebackref!(stateref, stateindex)
     f(j)
 end
-project_traceout!(f, r::RegRef, basis; time=nothing) = project_traceout!(f, r.reg, r.idx, basis; time=nothing)
+project_traceout!(f, r::RegRef, basis; time=nothing) = project_traceout!(f, r.reg, r.idx, basis; time)

src/concurrentsim.jl

@@ -42,7 +42,7 @@ function get_time_tracker(rn::RegisterNet)
     return get_time_tracker(rn.registers[1])
 end
 function get_time_tracker(r::Register)
-    r.locks[1].env
+    r.locks[1].env::Simulation
 end
 function get_time_tracker(r::RegRef)
     get_time_tracker(r.reg)

src/states_registers_networks_getset.jl

@@ -8,7 +8,7 @@
 ## Networks
 
 # Graph interface
-Graphs.add_vertex!(net::RegisterNet, a, b) = add_vertex!(net.graph, a, b)
+Graphs.add_vertex!(net::RegisterNet) = add_vertex!(net.graph)
 Graphs.vertices(net::RegisterNet) = vertices(net.graph)
 Graphs.edges(net::RegisterNet) = edges(net.graph)
 Graphs.neighbors(net::RegisterNet, v) = neighbors(net.graph, v)
@@ -43,8 +43,8 @@
 Base.getindex(net::RegisterNet, ::Colon) = net.registers
 Base.getindex(net::RegisterNet, ::Colon, j::Int) = [r[j] for r in net.registers]
 Base.getindex(net::RegisterNet, ::Colon, k::Symbol) = [m[k] for m in net.vertex_metadata]
-Base.getindex(net::RegisterNet, ::Tuple{Colon,Colon}, k::Symbol) = [net.edge_metadata[minmax(ij)...][k] for ij in edges(net)]
-Base.getindex(net::RegisterNet, ::Pair{Colon,Colon}, k::Symbol) = [net.directed_edge_metadata[ij][k] for ij in edges(net)]
+Base.getindex(net::RegisterNet, ::Tuple{Colon,Colon}, k::Symbol) = [net.edge_metadata[minmax(Tuple(ij)...)][k] for ij in edges(net)]
+Base.getindex(net::RegisterNet, ::Pair{Colon,Colon}, k::Symbol) = [net.directed_edge_metadata[Pair(ij)][k] for ij in edges(net)]
 
 function Base.setindex!(net::RegisterNet, v, ::Colon, k::Symbol)
     for m in net.vertex_metadata

test/Project.toml

@@ -8,9 +8,11 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
+GraphsMatching = "c3af3a8c-b79e-4b01-bf44-c718d7e0e0d6"
 InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
 JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
+JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
 JumpProcesses = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -29,6 +31,7 @@ Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
 StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+SumTypes = "8e1ec7a9-0e02-4297-b0fe-6433085c89f2"
 SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
 Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
 TermInterface = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c"

test/test_jet.jl

@@ -1,6 +1,6 @@
 using Test
 using QuantumSavory, JET
-using DiffEqBase, Graphs, JumpProcesses, Makie, ResumableFunctions, ConcurrentSim, QuantumOptics, QuantumOpticsBase, QuantumClifford, Symbolics, WignerSymbols
+using DiffEqBase, Graphs, JumpProcesses, Makie, ResumableFunctions, ConcurrentSim, QuantumOptics, QuantumOpticsBase, QuantumClifford, Symbolics, WignerSymbols, GraphsMatching, JuMP, SumTypes
 
 rep = report_package("QuantumSavory";
     ignored_modules=(
@@ -16,10 +16,13 @@ rep = report_package("QuantumSavory";
         AnyFrameModule(ResumableFunctions),
         AnyFrameModule(ConcurrentSim),
         AnyFrameModule(WignerSymbols),
+        AnyFrameModule(GraphsMatching),
+        AnyFrameModule(JuMP.Containers),
+        AnyFrameModule(SumTypes),
     ))
 
 @show length(JET.get_reports(rep))
 @show rep
 
-@test length(JET.get_reports(rep)) <= 85
+@test length(JET.get_reports(rep)) <= 33
 @test_broken length(JET.get_reports(rep)) == 0