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Properly resolve relative paths in scripts/gen_ref_nav.py #672

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Job	Run time
lint (flake8)	16s
test (py38)	42s
lint (pep517check)	18s
test (py39)	42s
lint (checkspelling)	1m 24s
test (py310)	31s
test (py311)	40s
test (py312)	58s
test (pypy38)	2m 0s
test (pypy39)	2m 24s
test (pypy310)	2m 12s
test (pygments)	35s
	12m 42s