A conda environment.yml file is provided in this repository. It can be used to set up a conda environment as follows:
conda env create -f environment.yml
Once the environment has been create, activate it:
conda activate sequdas-qc
...then install the sequdas_qc codebase into the environment in 'editable' mode
pip install --editable .
You can verify that sequdas-qc is available on the $PATH by invoking the help output as follows:
sequdas-qc -h