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@ProteinDesignLab

Protein Design Lab

Possu Huang Lab, Stanford Bioengineering

Popular repositories Loading

  1. protpardelle protpardelle Public

    Diffusion-based all-atom protein generative model.

    Python 174 15

  2. protein-design-tutorials protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    Jupyter Notebook 102 27

  3. protein_seq_des protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    Python 78 20

  4. IgVAE IgVAE Public

    Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    Python 25 5

  5. pdb-tools pdb-tools Public

    Forked from haddocking/pdb-tools

    Set of utility scripts to manipulate PDB files

    Python 4 2

  6. visualize_violations visualize_violations Public

    Script for visualizing wrong/violated predictions in PyMol

    Python 3 1

Repositories

Showing 9 of 9 repositories
  • protpardelle Public

    Diffusion-based all-atom protein generative model.

    ProteinDesignLab/protpardelle’s past year of commit activity
    Python 174 MIT 15 3 0 Updated Dec 1, 2024
  • protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    ProteinDesignLab/protein_seq_des’s past year of commit activity
    Python 78 BSD-3-Clause 20 0 0 Updated Sep 8, 2023
  • protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    ProteinDesignLab/protein-design-tutorials’s past year of commit activity
    Jupyter Notebook 102 27 0 0 Updated Aug 15, 2023
  • IgVAE Public Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    ProteinDesignLab/IgVAE’s past year of commit activity
    Python 25 BSD-3-Clause 9 0 0 Updated Jul 25, 2022
  • IgFold Public Forked from Graylab/IgFold

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    ProteinDesignLab/IgFold’s past year of commit activity
    Python 0 62 0 0 Updated May 4, 2022
  • ColabFold Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all via Google Colab!

    ProteinDesignLab/ColabFold’s past year of commit activity
    Jupyter Notebook 0 MIT 512 0 0 Updated Aug 7, 2021
  • visualize_violations Public

    Script for visualizing wrong/violated predictions in PyMol

    ProteinDesignLab/visualize_violations’s past year of commit activity
    Python 3 1 0 0 Updated Jun 14, 2020
  • pdb-tools Public Forked from haddocking/pdb-tools

    Set of utility scripts to manipulate PDB files

    ProteinDesignLab/pdb-tools’s past year of commit activity
    Python 4 115 0 0 Updated Feb 19, 2018
  • BetaBarrelBuilder Public Forked from JesslynJanssen/BetaBarrelBuilder

    GUI for building beta barrels and exporting the resulting PDB

    ProteinDesignLab/BetaBarrelBuilder’s past year of commit activity
    Java 0 1 0 0 Updated Dec 28, 2017

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