Auto3DSeg continue training (skip trained algos) #6310
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Signed-off-by: myron <[email protected]>
Signed-off-by: myron <[email protected]>
Signed-off-by: myron <[email protected]>
myron
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Signed-off-by: myron <[email protected]>
Signed-off-by: myron <[email protected]>
mingxin-zheng
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Apr 6, 2023
Signed-off-by: Wenqi Li <[email protected]>
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Signed-off-by: Wenqi Li <[email protected]>
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wyli
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Apr 6, 2023
This was referenced Apr 7, 2023
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algo_dict key updates this should be merged after updates in Project-MONAI/MONAI#6310 fixes #1306 --------- Signed-off-by: myron <[email protected]> Signed-off-by: Mingxin Zheng <[email protected]>
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Apr 21, 2024
algo_dict key updates this should be merged after updates in Project-MONAI/MONAI#6310 fixes Project-MONAI#1306 --------- Signed-off-by: myron <[email protected]> Signed-off-by: Mingxin Zheng <[email protected]>
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Second PR for issue #6291
fixes #6291
Since the previous PR #6290 was reverted #6295
Allows to skip the already trained algos, and continue training only for the non-trained ones.
after this PR, the default option AutoRunner(train=None) will have this behavior, whereas manually setting AutoRunner(train=True/False) will always train all or skip all training. Previously we can only train all or skip all (without any option to resume)
I changed import_bundle_algo_history() to return a better algo_dict
previously it returned "list[dict(name: algo)]" - a list of dict, but each dict must have a single key name "name => algo". Not it returns a list of dicts, each with several keys dict(AlgoEnsembleKeys.ID: name, AlgoEnsembleKeys.ALGO, algo, "is_trained": bool, etc).
this allows to put additional metadata inside of each algo_dict, and it's easier to read it back.
previously, to get a name we had to use "name = history[0].keys()[0]", now it's more elegant "name = history[0][AlgoEnsembleKeys.ID]".
this however required to change many files, everywhere where import_bundle_algo_history and export_bundle_algo_history was used.
All the tests have passed, except for "integration GPU utilization tests" , but those errors seems unrelated
After this PR, tutorials need to be updated too Project-MONAI/tutorials#1288