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Added callable options for iteration_log and epoch_log in StatsHandler #5965

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vfdev-5
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@vfdev-5 vfdev-5 commented Feb 9, 2023

Fixes #5964

Description

Added callable options for iteration_log and epoch_log in StatsHandler.

Ref: #5958 (reply in thread)

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@vfdev-5 vfdev-5 force-pushed the issue-5964-statshandler-override-args branch from 9f52d54 to 1488b06 Compare February 9, 2023 11:10
@vfdev-5 vfdev-5 requested a review from Nic-Ma February 9, 2023 11:16
tests/test_handler_stats.py Outdated Show resolved Hide resolved
wyli and others added 2 commits February 9, 2023 12:18
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vfdev-5 commented Feb 9, 2023

@wyli I wonder which job actually runs test_handler_stats.py, can you please put a link on it ?

@vfdev-5 vfdev-5 marked this pull request as ready for review February 9, 2023 12:58
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wyli commented Feb 9, 2023

I think this one https://github.com/Project-MONAI/MONAI/actions/runs/4134447826/jobs/7145596787

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wyli commented Feb 9, 2023

/build

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ericspod commented Feb 9, 2023

I had a few minor suggestions but looks like a good change!

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Hi @vfdev-5 ,

Looks good to me.
Could you please help also enable this feature for other very similar handlers? Like:
https://github.com/Project-MONAI/MONAI/blob/dev/monai/handlers/tensorboard_handlers.py#L94
And:
https://github.com/Project-MONAI/MONAI/blob/dev/monai/handlers/mlflow_handler.py#L101

Thanks in advance.

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vfdev-5 commented Feb 10, 2023

@Nic-Ma yes, I can take a look on that in a follow-up PR

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wyli commented Feb 10, 2023

/build

@Nic-Ma Nic-Ma enabled auto-merge (squash) February 10, 2023 08:21
@Nic-Ma Nic-Ma merged commit de2b48c into Project-MONAI:dev Feb 10, 2023
@vfdev-5 vfdev-5 deleted the issue-5964-statshandler-override-args branch February 10, 2023 09:07
wyli added a commit to wyli/MONAI that referenced this pull request Feb 13, 2023
Project-MONAI#5965)

Fixes Project-MONAI#5964

### Description

Added callable options for iteration_log and epoch_log in StatsHandler.

Ref:
Project-MONAI#5958 (reply in thread)


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [x] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: vfdev-5 <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: vfdev <[email protected]>
Co-authored-by: Wenqi Li <[email protected]>
Co-authored-by: Eric Kerfoot <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Wenqi Li <[email protected]>
wyli pushed a commit that referenced this pull request Feb 20, 2023
… and MLFlow (#5976)

Follow-up PR on extending `iteration_log`/`epoch_log` functionality

### Description

> Could you please help also enable this feature for other very similar
handlers? Like:

https://github.com/Project-MONAI/MONAI/blob/dev/monai/handlers/tensorboard_handlers.py#L94
And:

https://github.com/Project-MONAI/MONAI/blob/dev/monai/handlers/mlflow_handler.py#L101

-
#5965 (review)

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [x] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.
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overriding iteration_log and epoch_log in StatsHandler
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