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Signed-off-by: Wenqi Li <[email protected]>
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@wyli
wyli committed Sep 26, 2023
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68 changes: 34 additions & 34 deletions CHANGELOG.md
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## [1.3.0] - 2023-10-06
### Added
* Intensity transforms with fixed mean `ScaleIntensityFixedMean` and `RandScaleIntensityFixedMean` (#6542)
* Intensity transforms `ScaleIntensityFixedMean` and `RandScaleIntensityFixedMean` (#6542)
* `UltrasoundConfidenceMapTransform` used for computing confidence map from an ultrasound image (#6709)
* `channel_wise` support in `RandScaleIntensity` and `RandShiftIntensity` (#6793, #7025)
* `RandSimulateLowResolution` and `RandSimulateLowResolutiond` (#6806)
* `SignalFillEmptyd` (#7011)
* Port loss and metrics from `monai-generative` (#6729, #6836)
* Support `invert_image` and `retain_stats` in `AdjustContrast` and `RandAdjustContrast` (#6542)
* New network `DAF3D` and `Quicknat` (#6306)
* `end_lr` support in `WarmupCosineSchedule` (#6662)
* Add `CallableEventWithFilter` and `Events` options for `trigger_event` in `GarbageCollector` (#6663)
* `yandex.disk` support in `download_url` (#6667)
* Support `sincos` position embedding (#6986)
* `ZarrAvgMerger` used for patch inference (#6633)
* Dataset tracking support to `MLFlowHandler` (#6616)
* Considering spacing and subvoxel borders in `SurfaceDiceMetric` (#6681)
* Add `loss_fn` support in `IgniteMetric` and renamed it to `IgniteMetricHandler` (#6695)
* `loss_fn` support in `IgniteMetric` and renamed it to `IgniteMetricHandler` (#6695)
* `CallableEventWithFilter` and `Events` options for `trigger_event` in `GarbageCollector` (#6663)
* Support random sorting option to `GridPatch`, `RandGridPatch`, `GridPatchd` and `RandGridPatchd` (#6701)
* Support multi-threaded batch sampling in `PatchInferer` (#6139)
* Add the dataset tracking support to `MLFlowHandler` (#6616)
* `UltrasoundConfidenceMapTransform` used for computing confidence map from an ultrasound image (#6709)
* Add `SoftclDiceLoss` and `SoftDiceclDiceLoss` (#6763)
* Add documention for `TensorFloat-32` (#6770)
* Add docstring format guide (#6780)
* `SoftclDiceLoss` and `SoftDiceclDiceLoss` (#6763)
* `HausdorffDTLoss` and `LogHausdorffDTLoss` (#6994)
* Documentation for `TensorFloat-32` (#6770)
* Docstring format guide (#6780)
* `GDSDataset` support for GDS (#6778)
* Add `channel_wise` support in `RandScaleIntensity` and `RandShiftIntensity` (#6793, #7025)
* Add `RandSimulateLowResolution` and `RandSimulateLowResolutiond` (#6806)
* Port loss and metrics from `monai-generative` (#6729, #6836)
* Add PyTorch backend support for `MapLabelValue` (#6872)
* Add `freeze_layers` to help freeze specific layers (#6970)
* Add `filter_func` in `copy_model_state` to filter the weights to be loaded and `filter_swinunetr` (#6917)
* Add `stats_sender` to `MonaiAlgo` for FL stats (#6984)
* Support `sincos` position embedding (#6986)
* Add `HausdorffDTLoss` and `LogHausdorffDTLoss` (#6994)
* Add `SignalFillEmptyd` (#7011)
* PyTorch backend support for `MapLabelValue` (#6872)
* `filter_func` in `copy_model_state` to filter the weights to be loaded and `filter_swinunetr` (#6917)
* `stats_sender` to `MonaiAlgo` for FL stats (#6984)
* `freeze_layers` to help freeze specific layers (#6970)
#### misc.
* Refactor multi-node running command used in `Auto3DSeg` into dedicated functions (#6623)
* Support str type annotation to `device` in `ToTensorD` (#6737)
* Improve logging message and file name extenstion in `DataAnalyzer` for `Auto3DSeg` (#6758)
* Set `data_range` as a property in `SSIMLoss` (#6788)
* `end_lr` support in `WarmupCosineSchedule` (#6662)
* Add `ClearML` as optional dependency (#6827)
* `yandex.disk` support in `download_url` (#6667)
* Improve config expression error message (#6977)
### Fixed
#### transforms
Expand All @@ -58,15 +58,15 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
* Fix missing `SegmentDescription` in `PydicomReader` (#6937)
* Fix reading dicom series error in `ITKReader` (#6943)
* Fix KeyError in `PydicomReader` (#6946)
* Update `metatensor_to_itk_image` to accept RAS `MetaTensor` and update default 'space' in `NrrdReader` to `SpaceKeys.LPS` (#7000)
* Update `metatensor_to_itk_image` to accept RAS `MetaTensor` and update default 'space' in `NrrdReader` to `SpaceKeys.LPS` (#7000)
#### metrics and losses
* Fixed bug in `GeneralizedDiceLoss` when `batch=True` (#6775)
* Add support for `BCEWithLogitsLoss` in `DiceCELoss` (#6924)
* Support for `BCEWithLogitsLoss` in `DiceCELoss` (#6924)
#### networks
* Use `np.prod` instead of `np.product` (#6639)
* Fix dimension issue in `MBConvBlock` (#6672)
* Fix hard-coded `up_kernel_size` in `ViTAutoEnc` (#6735)
* Remove hard coding of `bias_downsample` in `resnet` (#6848)
* Remove hard-coded `bias_downsample` in `resnet` (#6848)
* Fix unused `kernel_size` in `ResBlock` (#6999)
* Allow for defining reference grid on non-integer coordinates (#7032)
#### bundle
Expand Down Expand Up @@ -98,7 +98,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
* Fixed `test_retinanet` by increasing absolute differences (#6615)
* Add type check to avoid comparing a np.array with a string in `_check_kwargs_are_present` (#6624)
* Fix md5 hashing with FIPS mode (#6635)
* Capture failures from auto3dseg related subprocess calls (#6596)
* Capture failures from Auto3DSeg related subprocess calls (#6596)
### Changed
* Base Docker image upgraded to `nvcr.io/nvidia/pytorch:23.08-py3` from `nvcr.io/nvidia/pytorch:23.03-py3`
### Deprecated
Expand All @@ -108,15 +108,15 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
* `pos_embed` in `PatchEmbeddingBlock` in favor of `proj_type`(#6986)
* `net_name` and `net_kwargs` in `download` in favor of `model`(#7016)
### Removed
* Remove `pad_val`, `stride`, `per_channel` and `upsampler` in `OcclusionSensitivity` (#6642)
* Remove `compute_meaniou` (#7019)
* Remove `AsChannelFirst`, `AddChannel`and `SplitChannel` (#7019)
* Remove `create_multigpu_supervised_trainer` and `create_multigpu_supervised_evaluator` (#7019)
* Removed `runner_id` in `run` (#7019)
* Removed `data_src_cfg_filename` in `AlgoEnsembleBuilder` (#7019)
* Removed `get_validation_stats` in `Evaluator` and `get_train_stats` in `Trainer` (#7019)
* Removed `epoch_interval` and `iteration_interval` in `TensorBoardStatsHandler` (#7019)
* Removed some self-hosted test (#7041)
* `pad_val`, `stride`, `per_channel` and `upsampler` in `OcclusionSensitivity` (#6642)
* `compute_meaniou` (#7019)
* `AsChannelFirst`, `AddChannel`and `SplitChannel` (#7019)
* `create_multigpu_supervised_trainer` and `create_multigpu_supervised_evaluator` (#7019)
* `runner_id` in `run` (#7019)
* `data_src_cfg_filename` in `AlgoEnsembleBuilder` (#7019)
* `get_validation_stats` in `Evaluator` and `get_train_stats` in `Trainer` (#7019)
* `epoch_interval` and `iteration_interval` in `TensorBoardStatsHandler` (#7019)
* some self-hosted test (#7041)

## [1.2.0] - 2023-06-08
### Added
Expand Down Expand Up @@ -931,7 +931,7 @@ the postprocessing steps should be used before calling the metrics methods
[highlights]: https://github.com/Project-MONAI/MONAI/blob/master/docs/source/highlights.md

[Unreleased]: https://github.com/Project-MONAI/MONAI/compare/1.3.0...HEAD
[1.3.0]: https://github.com/Project-MONAI/MONAI/compare/1.1.0...1.3.0
[1.3.0]: https://github.com/Project-MONAI/MONAI/compare/1.2.0...1.3.0
[1.2.0]: https://github.com/Project-MONAI/MONAI/compare/1.1.0...1.2.0
[1.1.0]: https://github.com/Project-MONAI/MONAI/compare/1.0.1...1.1.0
[1.0.1]: https://github.com/Project-MONAI/MONAI/compare/1.0.0...1.0.1
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