Allow an arbitrary mask to be used in the self attention #15936
Workflow file for this run
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| # Jenkinsfile.monai-premerge | |
| name: premerge-min | |
| on: | |
| # quick tests for pull requests and the releasing branches | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| - releasing/* | |
| pull_request: | |
| head_ref-ignore: | |
| - dev | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: build-min-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # caching of these jobs: | |
| # - docker-py3-pip- (shared) | |
| # - ubuntu py37 pip- | |
| # - os-latest-pip- (shared) | |
| min-dep-os: # min dependencies installed tests for different OS | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, macOS-latest, ubuntu-latest] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --upgrade pip wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| python -m pip install torch --index-url https://download.pytorch.org/whl/cpu | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (CPU ${{ runner.os }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| shell: bash | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} | |
| min-dep-py3: # min dependencies installed tests for different python | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --user --upgrade pip setuptools wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (CPU ${{ runner.os }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} | |
| min-dep-pytorch: # min dependencies installed tests for different pytorch | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| pytorch-version: ['1.10.2', '1.11.0', '1.12.1', '1.13', '2.0.1', 'latest'] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --user --upgrade pip setuptools wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| if [ ${{ matrix.pytorch-version }} == "latest" ]; then | |
| python -m pip install torch | |
| else | |
| python -m pip install torch==${{ matrix.pytorch-version }} | |
| fi | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (pytorch ${{ matrix.pytorch-version }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} |