[Sweep GHA Fix] The GitHub Actions run failed with...

[sweep-ai]

Description

This pull request includes the following changes:

• Added a GitHub Actions workflow file .github/workflows/main.yml to set up continuous integration (CI) for the project.
• Updated the pyproject.toml file to include the python_version requirement of >=3.8.
• Added a requirements.txt file with the required dependencies for the project.
• Updated the setup.cfg file to include additional dependencies for the project.

Summary

• Added a GitHub Actions workflow file .github/workflows/main.yml to set up CI.
• Updated pyproject.toml to include the python_version requirement of >=3.8.
• Added a requirements.txt file with the required dependencies.
• Updated setup.cfg to include additional dependencies.

[sweep-ai]

Apply Sweep Rules to your PR?

• Apply: All new business logic should have corresponding unit tests.
• Apply: Refactor large functions to be more modular.
• Apply: Add docstrings to all functions and file headers.

[sweep-ai]

Fixing PR: track the progress here.

I'm currently fixing this PR to address the following:

[Sweep GHA Fix] The GitHub Actions run failed with the following error logs:

The command:
Run cd mm-workflows/docs && make html
yielded the following error:
##[error]Process completed with exit code 2.
##[group]Run cd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/
�[36;1mcd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/�[0m
shell: /bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /Users/runner/miniconda3
  CONDA_PKGS_DIR: /Users/runner/conda_pkgs_dir
##[endgroup]
/Users/runner/work/_temp/f80db278-5036-4610-be54-9e94e52eed95.sh: line 1: autopep8: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && pip install ".[all]" && mm-workflows
�[36;1mcd mm-workflows/ && pip install ".[all]" && mm-workflows�[0m
shell: /usr/bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /usr/share/miniconda3
  CONDA_PKGS_DIR: /home/runner/conda_pkgs_dir
##[endgroup]
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or 
- Make your system-wide implementation visible by installing ocl-icd-system conda package. 
Processing /home/runner/work/mm-workflows/mm-workflows/mm-workflows
error: invalid-pyproject-build-system-requires

× Can not process file:///home/runner/work/mm-workflows/mm-workflows/mm-workflows
╰─> This package has an invalid `build-system.requires` key in pyproject.toml.
    It contains an invalid requirement: "python_version = '>=3.7,<3.11'"

note: This is an issue with the package mentioned above, not pip.
hint: See PEP 518 for the detailed specification.
##[error]Process completed with exit code 1.
##[group]Run cd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/
�[36;1mcd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/�[0m
shell: C:\Program Files\Git\bin\bash.EXE -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: C:\Miniconda3
  CONDA_PKGS_DIR: C:\Users\runneradmin\conda_pkgs_dir
##[endgroup]
D:\a\_temp\bbd67ca8-4a2f-48c8-82a7-7eb87596984e.sh: line 1: autopep8: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && pylint src/ examples/**/*.py
�[36;1mcd mm-workflows/ && pylint src/ examples/**/*.py�[0m
shell: /usr/bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /usr/share/miniconda3
  CONDA_PKGS_DIR: /home/runner/conda_pkgs_dir
##[endgroup]
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or 
- Make your system-wide implementation visible by installing ocl-icd-system conda package. 
/home/runner/work/_temp/21789146-975c-452b-87ee-8be19494dd51.sh: line 1: pylint: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && pylint src/ examples/**/*.py
�[36;1mcd mm-workflows/ && pylint src/ examples/**/*.py�[0m
shell: /bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /Users/runner/miniconda3
  CONDA_PKGS_DIR: /Users/runner/conda_pkgs_dir
##[endgroup]
/Users/runner/work/_temp/56bd9f40-25a4-42ee-9eb6-399b3244a77f.sh: line 1: pylint: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && mypy src/ examples/ cwl_adapters/
�[36;1mcd mm-workflows/ && mypy src/ examples/ cwl_adapters/�[0m
shell: C:\Program Files\Git\bin\bash.EXE -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: C:\Miniconda3
  CONDA_PKGS_DIR: C:\Users\runneradmin\conda_pkgs_dir
##[endgroup]
D:\a\_temp\c02d88d2-234e-48e4-8e69-d8cc74bbd038.sh: line 1: mypy: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/docs && make html
�[36;1mcd mm-workflows/docs && make html�[0m
shell: C:\Program Files\Git\bin\bash.EXE -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: C:\Miniconda3
  CONDA_PKGS_DIR: C:\Users\runneradmin\conda_pkgs_dir
##[endgroup]
/usr/bin/sh: line 1: sphinx-build: command not found
make: *** [Makefile:20: html] Error 127
##[error]Process completed with exit code 2.
##[group]Run cd mm-workflows/ && pip install ".[all]" && mm-workflows
�[36;1mcd mm-workflows/ && pip install ".[all]" && mm-workflows�[0m
shell: /bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /Users/runner/miniconda3
  CONDA_PKGS_DIR: /Users/runner/conda_pkgs_dir
##[endgroup]
Processing /Users/runner/work/mm-workflows/mm-workflows/mm-workflows
error: invalid-pyproject-build-system-requires

× Can not process file:///Users/runner/work/mm-workflows/mm-workflows/mm-workflows
╰─> This package has an invalid `build-system.requires` key in pyproject.toml.
    It contains an invalid requirement: "python_version = '>=3.7,<3.11'"

note: This is an issue with the package mentioned above, not pip.
hint: See PEP 518 for the detailed specification.
##[error]Process completed with exit code 1.
##[group]Run cd mm-workflows/ && pip install ".[all]" && mm-workflows
�[36;1mcd mm-workflows/ && pip install ".[all]" && mm-workflows�[0m
shell: C:\Program Files\Git\bin\bash.EXE -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: C:\Miniconda3
  CONDA_PKGS_DIR: C:\Users\runneradmin\conda_pkgs_dir
##[endgroup]
Processing d:\a\mm-workflows\mm-workflows\mm-workflows
error: invalid-pyproject-build-system-requires

Can not process file:///D:/a/mm-workflows/mm-workflows/mm-workflows

This package has an invalid `build-system.requires` key in pyproject.toml.
It contains an invalid requirement: "python_version = '>=3.7,<3.11'"

note: This is an issue with the package mentioned above, not pip.
hint: See PEP 518 for the detailed specification.
##[error]Process completed with exit code 1.
##[group]Run cd mm-workflows/ && mypy src/ examples/ cwl_adapters/
�[36;1mcd mm-workflows/ && mypy src/ examples/ cwl_adapters/�[0m
shell: /usr/bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /usr/share/miniconda3
  CONDA_PKGS_DIR: /home/runner/conda_pkgs_dir
##[endgroup]
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or 
- Make your system-wide implementation visible by installing ocl-icd-system conda package. 
/home/runner/work/_temp/29e38738-5f7c-4844-9e95-a79cd1b85038.sh: line 1: mypy: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && pylint src/ examples/**/*.py
�[36;1mcd mm-workflows/ && pylint src/ examples/**/*.py�[0m
shell: C:\Program Files\Git\bin\bash.EXE -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: C:\Miniconda3
  CONDA_PKGS_DIR: C:\Users\runneradmin\conda_pkgs_dir
##[endgroup]
D:\a\_temp\905f07ab-a39e-45d3-a126-8155e137e97d.sh: line 1: pylint: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/ && mypy src/ examples/ cwl_adapters/
�[36;1mcd mm-workflows/ && mypy src/ examples/ cwl_adapters/�[0m
shell: /bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /Users/runner/miniconda3
  CONDA_PKGS_DIR: /Users/runner/conda_pkgs_dir
##[endgroup]
/Users/runner/work/_temp/7cbeef30-20da-428c-b88f-5af7bd20678d.sh: line 1: mypy: command not found
##[error]Process completed with exit code 127.
##[group]Run cd mm-workflows/docs && make html
�[36;1mcd mm-workflows/docs && make html�[0m
shell: /bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /Users/runner/miniconda3
  CONDA_PKGS_DIR: /Users/runner/conda_pkgs_dir
##[endgroup]
/bin/sh: sphinx-build: command not found
make: *** [html] Error 127
##[error]Process completed with exit code 2.
##[group]Run cd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/
�[36;1mcd mm-workflows/ && autopep8 --exit-code --recursive --diff --max-line-length 120 examples/ src/�[0m
shell: /usr/bin/bash -l {0}
env:
  INPUT_RUN_POST: true
  CONDA: /usr/share/miniconda3
  CONDA_PKGS_DIR: /home/runner/conda_pkgs_dir
##[endgroup]
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or 
- Make your system-wide implementation visible by installing ocl-icd-system conda package. 
/home/runner/work/_temp/c515cb79-2cba-4264-bc53-f1802f98d83b.sh: line 1: autopep8: command not found
##[error]Process completed with exit code 127.

Here are the logs:
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or
- Make your system-wide implementation visible by installing ocl-icd-system conda package.
/bin/sh: 1: sphinx-build: not found
make: *** [Makefile:20: html] Error 127

[!CAUTION]

An error has occurred: 422 {"message": "Reference already exists", "documentation_url": "https://docs.github.com/rest/git/refs#create-a-reference"} (tracking ID: 4e69968c06)