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PolarBean authored Aug 21, 2024
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Expand Up @@ -34,40 +34,13 @@ If you would like to use DeepSlice but don't need your own personal installation
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<h2 style="font-weight: bold; text-decoration: underline"> From PIP </h2>
This is the easy and recommended way to install DeepSlice, simply:
This is the easy and recommended way to install DeepSlice, first make sure you have Python 3.11 installed and then simply:

```bash
pip install DeepSlice
```
And you're ready to go! 🚀 Check out the PyPi package [here](https://pypi.org/project/DeepSlice/)

<h2 style="font-weight: bold; text-decoration: underline"> From Source </h2>

**First** In order to easily install all the dependancies we recommend using [Anaconda](https://www.anaconda.com/products/individual "Anaconda Installation Files").


**Second** Once anaconda is installed, cd into your cloned DeepSlice directory, then cd into the 'conda_environments' directory, and use our premade environment files to setup your system.
```
cd DeepSlice/conda_environments
```
* **CPU Installation** For most users we recommend using the DS-CPU.yaml installation file. this will install all the dependencies required to run DeepSlice on your CPU.
Do this with the command:

conda env create -f DS-CPU.yml


* **GPU Installation** If you wish to run DeepSlice on a huge number of images, and have access to an nvidia GPU then please use the DS-GPU.yaml installation file.

conda env create -f DS-GPU.yml

**Finished :)** You are now ready to run DeepSlice. Just activate the environment using
```python
conda activate DS-CPU
```
or
```python
conda activate DS-GPU
```
If you run into any problems create a github issue and I will help you solve it.

<br>
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