Prepare for new release

.github/workflows/CI.yml

@@ -0,0 +1,52 @@
+name: CI
+on:
+  - push
+  - pull_request
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        version:
+          - '1.3'
+          - '1.4'
+          - 'nightly'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-runtest@latest
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: ./lcov.info
+          flags: unittests
+          name: codecov-umbrella
+          fail_ci_if_error: false
+          token: ${{ secrets.CODECOV }}
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1.4'
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
+      - run: julia --project=docs docs/make.jl
+        env:
+          GITHUB_TOKEN: ${{ secrets.TOKEN }}

.github/workflows/CompatHelper.yml

@@ -0,0 +1,24 @@
+name: CompatHelper
+
+on:
+  schedule:
+    - cron: '00 * * * *'
+
+jobs:
+  CompatHelper:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: [1.4.0]
+        julia-arch: [x86]
+        os: [ubuntu-latest]
+    steps:
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.julia-version }}
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

Project.toml

@@ -2,7 +2,7 @@ name = "EcologicalNetworks"
 uuid = "f03a62fe-f8ab-5b77-a061-bb599b765229"
 authors = ["Timothée Poisot <[email protected]>"]
 repo = "https://github.com/PoisotLab/EcologicalNetworks.jl"
-version = "0.2.2"
+version = "0.3.0"
 
 [deps]
 Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
@@ -16,7 +16,7 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
-julia = "1"
+julia = "1.3"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

README.md

@@ -39,12 +39,14 @@ That's it. Now head over to the
 
 ### On `master`
 
-[![Build Status](https://travis-ci.org/PoisotLab/EcologicalNetworks.jl.svg?branch=master)](https://travis-ci.org/PoisotLab/EcologicalNetworks.jl)
-[![Coverage Status](https://coveralls.io/repos/PoisotLab/EcologicalNetworks.jl/badge.svg?branch=master&service=github)](https://coveralls.io/github/PoisotLab/EcologicalNetworks.jl?branch=master)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/CI/badge.svg?branch=master)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/TagBot/badge.svg?branch=master)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/CompatHelper/badge.svg?branch=master)
 [![codecov.io](http://codecov.io/github/PoisotLab/EcologicalNetworks.jl/coverage.svg?branch=master)](http://codecov.io/github/PoisotLab/EcologicalNetworks.jl?branch=master)
 
 ### On `develop`
 
-[![Build Status](https://travis-ci.org/PoisotLab/EcologicalNetworks.jl.svg?branch=develop)](https://travis-ci.org/PoisotLab/EcologicalNetworks.jl)
-[![Coverage Status](https://coveralls.io/repos/github/PoisotLab/EcologicalNetworks.jl/badge.svg?branch=develop)](https://coveralls.io/github/PoisotLab/EcologicalNetworks.jl?branch=develop)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/CI/badge.svg?branch=develop)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/TagBot/badge.svg?branch=develop)
+![CI](https://github.com/PoisotLab/EcologicalNetworks.jl/workflows/CompatHelper/badge.svg?branch=develop)
 [![codecov.io](http://codecov.io/github/PoisotLab/EcologicalNetworks.jl/coverage.svg?branch=develop)](http://codecov.io/github/PoisotLab/EcologicalNetworks.jl?branch=develop)

docs/Project.toml

@@ -0,0 +1,6 @@
+[deps]
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[compat]
+Documenter = "0.24"

docs/make.jl

@@ -1,29 +1,19 @@
-using Pkg
-
-tmp_packages = ["EcologicalNetworksPlots", "Plots", "Documenter"]
-
 push!(LOAD_PATH,"../src/")
 
-Pkg.activate(".")
-
-Pkg.add.(tmp_packages) # IMPORTANT
-
 using Documenter
 using EcologicalNetworks
-using EcologicalNetworksPlots
 using Random
 
 makedocs(
          sitename = "EcologicalNetworks",
          authors = "Timothée Poisot",
-         modules = [EcologicalNetworks, EcologicalNetworksPlots],
+         modules = [EcologicalNetworks],
          pages = [
                   "Index" => "index.md",
                   "Interface" => [
                                   "Types" => "interface/types.md",
                                   "Conversions" => "interface/conversions.md",
-                                  "Core functions" => "interface/highlevel.md",
-                                  "Plotting" => "var/plots.md"
+                                  "Core functions" => "interface/highlevel.md"
                                  ],
                   "Network measures" => [
                                          "Links" => "properties/links.md",
@@ -39,14 +29,13 @@ makedocs(
                   "Random networks" => [
                                         "Null models" => "random/null.md",
                                         "Structural models" => "random/structure.md"
-                                       ]                 
+                                       ]
                  ]
         )
 
 deploydocs(
            deps   = Deps.pip("pygments", "python-markdown-math"),
            repo   = "github.com/PoisotLab/EcologicalNetworks.jl.git",
-           devbranch = "master"
+           devbranch = "master",
+           push_preview = true
           )
-
-Pkg.rm.(tmp_packages) # IMPORTANT