Update develop with master

.github/workflows/TagBot.yml

@@ -0,0 +1,11 @@
+name: TagBot
+on:
+  schedule:
+    - cron: 0 * * * *
+jobs:
+  TagBot:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -2,3 +2,4 @@ EcologicalNetwork.tar.gz
 docs/build/
 docs/site/
 network.png
+Manifest.toml

Project.toml

@@ -1,7 +1,8 @@
 name = "EcologicalNetworks"
 uuid = "f03a62fe-f8ab-5b77-a061-bb599b765229"
+authors = ["Timothée Poisot <[email protected]>"]
 repo = "https://github.com/PoisotLab/EcologicalNetworks.jl"
-version = "0.2.0"
+version = "0.2.2"
 
 [deps]
 Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
@@ -13,7 +14,12 @@ Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[compat]
+julia = "1"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

README.md

@@ -9,11 +9,6 @@ networks. The current version is compatible with `julia` version 1.0 and 0.7.
 [![](https://img.shields.io/badge/docs-dev-orange.svg)](https://PoisotLab.github.io/EcologicalNetworks.jl/dev)
 [![Join the chat at https://gitter.im/PoisotLab/EcologicalNetworks.jl](https://badges.gitter.im/PoisotLab/EcologicalNetworks.jl.svg)](https://gitter.im/PoisotLab/EcologicalNetworks.jl?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
 
-There is a short bibliography of the methods in the [package
-documentation][pdocref], and in the documentations of each function.
-
-[pdocref]: http://poisotlab.io/EcologicalNetworks.jl/latest/#references
-
 ## Getting started
 
 Install (from the package mode):

docs/make.jl

@@ -1,6 +1,6 @@
 using Pkg
 
-tmp_packages = ["EcologicalNetworksPlots", "Plots"]
+tmp_packages = ["EcologicalNetworksPlots", "Plots", "Documenter"]
 
 push!(LOAD_PATH,"../src/")
 
@@ -11,38 +11,42 @@ Pkg.add.(tmp_packages) # IMPORTANT
 using Documenter
 using EcologicalNetworks
 using EcologicalNetworksPlots
+using Random
 
 makedocs(
-    sitename = "EcologicalNetworks",
-    authors = "Timothée Poisot",
-    modules = [EcologicalNetworks, EcologicalNetworksPlots],
-    pages = [
-        "Index" => "index.md",
-        "Interface" => [
-            "Types" => "interface/types.md",
-            "Conversions" => "interface/conversions.md",
-            "Core functions" => "interface/highlevel.md"
-        ],
-        "Network measures" => [
-            "Links" => "properties/links.md",
-            "Modularity" => "properties/modularity.md",
-            "Nestedness" => "properties/nestedness.md",
-            "Motifs" => "properties/motifs.md",
-            "Centrality and paths" => "properties/paths.md",
-            "Overlap and similarity" => "properties/overlap.md",
-            "Null models" => "properties/nullmodels.md",
-            "Beta-diversity" => "properties/betadiversity.md",
-            "Resilience" => "properties/resilience.md",
-            "Information theory" => "properties/information.md"
-        ],
-        "Plots" => "plots.md"
-    ]
-)
+         sitename = "EcologicalNetworks",
+         authors = "Timothée Poisot",
+         modules = [EcologicalNetworks, EcologicalNetworksPlots],
+         pages = [
+                  "Index" => "index.md",
+                  "Interface" => [
+                                  "Types" => "interface/types.md",
+                                  "Conversions" => "interface/conversions.md",
+                                  "Core functions" => "interface/highlevel.md",
+                                  "Plotting" => "var/plots.md"
+                                 ],
+                  "Network measures" => [
+                                         "Links" => "properties/links.md",
+                                         "Modularity" => "properties/modularity.md",
+                                         "Nestedness" => "properties/nestedness.md",
+                                         "Motifs" => "properties/motifs.md",
+                                         "Centrality and paths" => "properties/paths.md",
+                                         "Overlap and similarity" => "properties/overlap.md",
+                                         "Beta-diversity" => "properties/betadiversity.md",
+                                         "Resilience" => "properties/resilience.md",
+                                         "Information theory" => "properties/information.md"
+                                        ],
+                  "Random networks" => [
+                                        "Null models" => "random/null.md",
+                                        "Structural models" => "random/structure.md"
+                                       ]                 
+                 ]
+        )
 
 deploydocs(
-    deps   = Deps.pip("pygments", "python-markdown-math"),
-    repo   = "github.com/PoisotLab/EcologicalNetworks.jl.git",
-    devbranch = "master"
-)
+           deps   = Deps.pip("pygments", "python-markdown-math"),
+           repo   = "github.com/PoisotLab/EcologicalNetworks.jl.git",
+           devbranch = "master"
+          )
 
 Pkg.rm.(tmp_packages) # IMPORTANT