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add other files #150

Workflow file for this run

name: Python CI
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
test:
runs-on: ubuntu-latest
steps:
- name: Checkout the repository
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Install requirements dependencies
run: |
pip install cyvcf2==0.31.1
pip install numpy==2.0.1
pip install pandas==2.2.2
pip install statsmodels==0.14.4
pip install qmplot==0.3.3
pip install scipy==1.14.1
pip install setuptools==75.6.0
pip install scikit-learn==1.6.0
pip install matplotlib==3.9.4
pip install seaborn==0.13.2
pip install plotly==5.24.1
pip install pytest==8.3.4
pip3 install pybind11-global
- name: Clean up existing libbdsg directory
run: |
rm -rf libbdsg
- name: Install libbdsg
run: |
sudo apt-get install -y --no-install-recommends libjansson-dev doxygen
git clone --recursive https://github.com/vgteam/libbdsg.git
pip install ./libbdsg
- name: Run pytest tests
run: python3 -m pytest