bb #146

	name: Python CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	test:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout the repository
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Install requirements dependencies
	run: \|
	pip install cyvcf2==0.31.1
	pip install numpy==2.0.1
	pip install pandas==2.2.2
	pip install statsmodels==0.14.4
	pip install qmplot==0.3.3
	pip install scipy==1.14.1
	pip install setuptools==75.6.0
	pip install scikit-learn==1.6.0
	pip install matplotlib==3.9.4
	pip install seaborn==0.13.2
	pip install plotly==5.24.1
	pip install pytest==8.3.4

	- name: Clean up existing libbdsg directory
	run: \|
	rm -rf libbdsg

	- name: Install libbdsg
	run: \|
	sudo apt-get install -y --no-install-recommends libjansson-dev doxygen
	git clone --recursive https://github.com/vgteam/libbdsg.git
	pip install ./libbdsg

	- name: Run pytest tests
	run: python3 -m pytest

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