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Merge pull request #133 from Plant-Food-Research-Open/update/modules
Updated modules to remove Bioconda `defaults` channel
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,5 @@ | ||
name: busco_busco | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
- bioconda::busco=5.7.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,9 +1,7 @@ | ||
--- | ||
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json | ||
name: "busco_generateplot" | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
- bioconda::busco=5.7.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,5 @@ | ||
name: bwa_index | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
- bioconda::bwa=0.7.18 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,10 +1,8 @@ | ||
name: bwa_mem | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
|
||
dependencies: | ||
- bwa=0.7.18 | ||
# renovate: datasource=conda depName=bioconda/samtools | ||
- samtools=1.20 | ||
- htslib=1.20.0 | ||
- samtools=1.20 |
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