v2.6.0

2.6.0 (2023-08-08)

Features

• data: update data to sync with CPIC 1.28 and latest PharmGKB (4cdfc34)

Bug Fixes

• data: update data (76bfe08)
• data: update F5 version (43b6637)
• namedallelematcher: fix DPYD call with ref and partial (fa09226)
• namedallelematcher: improve DPYD calling (57b2bd8)
• namedallelematcher: improve DPYD calling with HapB3 wobble (3528815)
• namedallelematcher: support wobble in DPYD HapB3 (65a1309)
• namedallelematcher: update HTML output to use Bootstrap 5 (3774cca)
• pharmcat: fix NPE when called without -o flag (a8d5f51)
• preprocessor: pipe stdout to a user's running interface to show warning messages from a subprocess (36c151b)
• reporter: display allele function in section 3 (5f48358)
• reporter: don't emit empty ids (c7f3d48)
• reporter: fix browser upgrade CSS (6ba5bf1)
• reporter: fix links to uncallable genes in section 3 (f1d4da2)
• reporter: identify homozygous DPYD haplotypes (0f10fe3)
• reporter: improve allele match data for CYP2C19 *1 (2bc80cd)
• reporter: improve message for uncalled because of no data (8211015)
• reporter: improve text for uncallable genes (7e794b3)
• reporter: list function in section 3 (e51483c)
• reporter: show function in section 3 even when there is a no call (4e2ea20)
• reporter: show genes in section III if uncallable (7da2075)