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@ParBLiSS

ParBLiSS

Parallel and Sequential Bioinformatics Libraries for High Throughput Sequences

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  1. FastANI FastANI Public

    Fast Whole-Genome Similarity (ANI) Estimation

    C++ 377 67

  2. PaSGAL PaSGAL Public

    Parallel Sequence to Graph Alignment

    C++ 35 4

  3. kmerind kmerind Public

    Parallel k-mer indexing for biological sequences

    C++ 12 13

  4. parconnect parconnect Public

    Computes graph connectivity for large graphs

    C++ 11 1

  5. bruno bruno Public

    Distributed Memory De Bruijn Graph Library

    C++ 5

Repositories

Showing 10 of 14 repositories
  • PairG Public

    Pairing reads on genome graphs

    ParBLiSS/PairG’s past year of commit activity
    C++ 2 Apache-2.0 1 0 1 Updated Feb 2, 2024
  • FastANI Public

    Fast Whole-Genome Similarity (ANI) Estimation

    ParBLiSS/FastANI’s past year of commit activity
    C++ 377 Apache-2.0 67 66 4 Updated Jan 10, 2024
  • kmerhash Public

    A parallel DNA k-mer counter based on optimized distributed memory hash tables

    ParBLiSS/kmerhash’s past year of commit activity
    C++ 5 Apache-2.0 3 0 0 Updated May 16, 2023
  • Variant_Framework Public
    ParBLiSS/Variant_Framework’s past year of commit activity
    C++ 1 0 0 0 Updated Mar 27, 2023
  • PaSGAL Public

    Parallel Sequence to Graph Alignment

    ParBLiSS/PaSGAL’s past year of commit activity
    C++ 35 MIT 4 3 0 Updated Nov 26, 2022
  • refcom Public
    ParBLiSS/refcom’s past year of commit activity
    C++ 0 Apache-2.0 1 1 0 Updated Mar 8, 2021
  • kmerind Public

    Parallel k-mer indexing for biological sequences

    ParBLiSS/kmerind’s past year of commit activity
    C++ 12 Apache-2.0 13 0 0 Updated Dec 14, 2018
  • psbec Public

    PSbEC is a parallel spectrum-based error correction software.

    ParBLiSS/psbec’s past year of commit activity
    C++ 0 Apache-2.0 0 0 0 Updated Dec 5, 2018
  • bruno Public

    Distributed Memory De Bruijn Graph Library

    ParBLiSS/bruno’s past year of commit activity
    C++ 5 Apache-2.0 0 2 0 Updated Aug 24, 2018
  • par-mhash Public

    Parallel Locality-Sensitive Hashing based heuristic algorithm to construct overlap graphs for large genomic datasets

    ParBLiSS/par-mhash’s past year of commit activity
    C++ 0 0 0 0 Updated Jul 19, 2018
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