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Release version 1.16.0
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@armintoepfer
armintoepfer committed Oct 29, 2024
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Expand Up @@ -14,14 +14,14 @@ Benchmarks show that _pbmm2_ outperforms BLASR in sequence identity,
number of mapped bases, and especially runtime. _pbmm2_ is the official
replacement for BLASR.

## Availability
## Binary Availability
Latest version can be installed via bioconda package `pbmm2`.

Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda)
for information on Installation, Support, License, Copyright, and Disclaimer.

## Latest Version
Version **1.13.1**: [Full changelog here](#full-changelog)
Version **1.16.0**: [Full changelog here](#full-changelog)

## Usage
_pbmm2_ offers following tools
Expand Down Expand Up @@ -422,7 +422,12 @@ and in the same orientation, which are the only fields that `samtools sort` uses

## Full Changelog

* 1.14.99 [early access]
* 1.16.0
* SMRT Link 25.1 release
* Do not warn about aligned input for minimizer sorted unaligned BAM input
* There are currently no plans to update the source code on GitHub, but binary releases will continue regularly

* 1.14.99
* Remove minimum DP length threshold for HiFi preset

* 1.14.0:
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2 comments on commit 7fb01ec

@bgruening
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Any reason to not release the source code anymore? I guess this counts than as closed source code and we need to change the license in Conda, Galaxy and other downstream distributions.

@armintoepfer
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pbmm2 has been distributed as a binary-only release since March 2022, as building and dependency handling in conda is hell. We've released seven times since then. The last three versions can't be build from GitHub, as I stopped syncing the dependencies. That didn't seem to bother anyone up to now, as everyone happily fetched the binary and moved on. There seems to be zero interest in the source, judging from the insane amount of merged pull requests, one code contribution five years ago.

What part of the license is changing?

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