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Stop running virtualenv-activate within scripts #143

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pb-cdunn opened this issue Jul 23, 2015 · 1 comment · Fixed by #153
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Stop running virtualenv-activate within scripts #143

pb-cdunn opened this issue Jul 23, 2015 · 1 comment · Fixed by #153
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@pb-cdunn
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The environment should be set up before the script starts.

dgordon has had problems using virtualenv (e.g. #137 and #142), so I want to decouple, though we'll still use it within FALCON-integrate.

Not high priority, but I'll get to it eventually, without objection.
@pb-cdunn pb-cdunn self-assigned this Jul 23, 2015
pb-cdunn pushed a commit to pb-cdunn/FALCON that referenced this issue Jul 31, 2015
Stop using virtualenv directly.
27e31e4 
Instead, expect everything to be available in the environment.
FALCON-integrate/FALCON-make can help set that up.

closes PacificBiosciences#143
@pb-cdunn pb-cdunn mentioned this issue Jul 31, 2015
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pb-jchin commented Aug 1, 2015

@pb-cdunn can you link the corresponded changes in FALCON-integrate for tracking purpose? Thanks.

This was referenced Aug 1, 2015
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pacbbbbot pushed a commit that referenced this issue Apr 29, 2018
Merge pull request #143 in SAT/falcon from bugfix/TAG-2375-calc-cutof…
4569afd 
…f-before-DBsplit to develop

* commit 'fb7e11e21c73a7963d0212731df55d2ff87309ef':
  Run DBsplit before calc length cutoff
@NicMAlexandre NicMAlexandre mentioned this issue Mar 25, 2019
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Stop using virtualenv directly. pb-cdunn/FALCON
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