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Copied from cDNA_primer #17

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496071e
fix compiler warning
May 21, 2015
1fd5a4b
ignore another warning
Jun 20, 2015
6db074d
.gitignore helps git-submodules
Jun 20, 2015
2287364
.gitignore FALCON binaries
Jun 19, 2015
c6cda80
squashed old `diconsensus` branch
pb-jchin Jul 21, 2014
c9e7e2c
VERBOSE logging from mk-flow
Jul 31, 2015
dc3b25e
copy Makefile
Jul 31, 2015
1a0ff60
rm unused files
Jul 31, 2015
abd5e84
simpler GNUmakefile
Jul 31, 2015
dc506e6
Merge pull request #4 from pb-cdunn/better-makefile
Aug 1, 2015
272b12d
install rule
Aug 12, 2015
64dbcac
For read that has many repeat hit, we only output top n supporting reads
pb-jchin Aug 20, 2015
a446872
it is actually LAshow.c not DBshow.c
pb-jchin Aug 20, 2015
ba681a6
Merge pull request #5 from pb-jchin/LA4Falcon_Improvement
pb-jchin Aug 21, 2015
2b54d63
safe guard for memory error
pb-jchin Aug 21, 2015
6531e5b
scan through MAX_HIT_COUNT * 2 but only output hit_count or MAX_HIT_…
pb-jchin Aug 21, 2015
005d701
scan MAX_HIT_COUNT * 2 but only ouput hit_count or MAX_HIT_COUNT sup…
pb-jchin Aug 21, 2015
3d2eda6
scan up to 50k hit and prioritize the hits by (overlap length - overh…
pb-jchin Aug 22, 2015
7ef40d8
Merge pull request #6 from pb-jchin/LA4Falcon_Improvement
pb-jchin Aug 22, 2015
24f1369
ignore .o .d
Sep 6, 2015
1ee01a1
no VERY_VERBOSE by default
Sep 6, 2015
e48fd4f
allow libdazzdb.a to come from LIBDIRS
Sep 8, 2015
207b185
Fix apparent MT bug.
Sep 22, 2015
6857500
Merge pull request #12 from pb-cdunn/fix-9
Sep 22, 2015
c2ed2f9
Always use .o intermediates
Sep 22, 2015
8f6079b
Fix warnings
Sep 22, 2015
753a4a5
Copied from cDNA_primer
Nov 4, 2015
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17 changes: 17 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
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/daligner
/HPCdaligner
/HPCmapper
/LAsort
/LAmerge
/LAsplit
/LAcat
/LAshow
/LAcheck

/LA4Falcon
/DB2Falcon
/DB.so
/daligner_p

*.o
*.d
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