First major version increment of mSWEEP (breaks backwards-compatibility).

This release will contain at least the following changes:

• Remove kallisto support. ✔️ (remove-kallisto-support)
• Remove support for Themisto versions v1.2.0 and older. ✔️ (remove-kallisto-support)
• Add conda recipe for easy installation. (#22) ✔️

Possible new features:

• Add option to evaluate the mGEMS binning algorithm from the mSWEEP call. ✔️ (54004d8)
• Incorporate the demix_check quality scores into mSWEEP. ❎
• Support reading alignments compressed with alignment-writer. ✔️ (f169fcc)
• Read alignments from cin. ✔️ (9878f8e)

Removed features:

• Matching a fasta file to groups indicators is no longer supported (deprecated options --fasta, --groups-list, --groups-delimiter). ✔️

Output format changes:

• Add the total number of reads to the abundances file (#21) ✔️
• Renamed total_hits to num_aligned in the abundances file (#21) ✔️

Build pipeline changes

• Removed support for building zlib from source (5c94591) ✔️
• Added the CMAKE_BUILD_WITH_FLTO flag for building with link-time optimization (ee1db01) ✔️