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PMCC-BioinformaticsCore · Jun 12, 2024 · 8a089e8 · 8a089e8
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-fa94a7b1
+b6e73b4e
diff --git a/index.html b/index.html
@@ -136,6 +136,10 @@
         <li>
     <a class="dropdown-item" href="./workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>
@@ -214,7 +218,7 @@ <h3 class="anchored" data-anchor-id="current-and-future-workshop-sessions">Curre
 <td>5th Jun 2024</td>
 </tr>
 <tr class="odd">
-<td>To-be-added</td>
+<td><a href="./sessions/2_nf_dev_intro.html">Working with nf-core Templates</a></td>
 <td>Introduction to developing bioinformatics workflow with Nextflow (Part3)</td>
 <td>12th Jun 2024</td>
 </tr>

diff --git a/search.json b/search.json
diff --git a/sessions/1_intro_run_nf.html b/sessions/1_intro_run_nf.html
@@ -136,6 +136,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/sessions/2_nf_dev_intro.html b/sessions/2_nf_dev_intro.html
@@ -136,6 +136,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>
@@ -262,7 +266,7 @@ <h3 class="anchored" data-anchor-id="workshop-schedule">Workshop schedule</h3>
 <td>5th Jun 2024</td>
 </tr>
 <tr class="odd">
-<td>Working with nf-core Templates</td>
+<td><a href="../workshops/5.1_nf_core_template.html">Working with nf-core Templates</a></td>
 <td>Introduction to developing nextflow workflow with nf-core templates</td>
 <td>12th Jun 2024</td>
 </tr>

diff --git a/sitemap.xml b/sitemap.xml
@@ -2,50 +2,54 @@
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-    <lastmod>2024-06-05T01:14:14.739Z</lastmod>
+    <lastmod>2024-06-12T01:27:29.555Z</lastmod>
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-    <lastmod>2024-06-05T01:14:13.126Z</lastmod>
+    <lastmod>2024-06-12T01:27:27.940Z</lastmod>
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-    <lastmod>2024-06-05T01:14:12.280Z</lastmod>
+    <lastmod>2024-06-12T01:27:27.088Z</lastmod>
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-    <lastmod>2024-06-05T01:14:10.690Z</lastmod>
+    <lastmod>2024-06-12T01:27:25.519Z</lastmod>
   </url>
   <url>
-    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/1.1_intro_nextflow.html</loc>
-    <lastmod>2024-06-05T01:14:09.608Z</lastmod>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/5.1_nf_core_template.html</loc>
+    <lastmod>2024-06-12T01:27:24.444Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/3.1_creating_a_workflow.html</loc>
-    <lastmod>2024-06-05T01:14:08.992Z</lastmod>
+    <lastmod>2024-06-12T01:27:22.488Z</lastmod>
+  </url>
+  <url>
+    <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/1.1_intro_nextflow.html</loc>
+    <lastmod>2024-06-12T01:27:23.094Z</lastmod>
   </url>
   <url>
     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/4.1_draft_future_sess.html</loc>
-    <lastmod>2024-06-05T01:14:09.996Z</lastmod>
+    <lastmod>2024-06-12T01:27:24.838Z</lastmod>
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   <url>
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-    <lastmod>2024-06-05T01:14:11.525Z</lastmod>
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-    <lastmod>2024-06-05T01:14:12.669Z</lastmod>
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     <loc>https://PMCC-BioinformaticsCore.github.io/nextflow-intro-workshop/workshops/2.1_customise_and_run.html</loc>
-    <lastmod>2024-06-05T01:14:14.390Z</lastmod>
+    <lastmod>2024-06-12T01:27:29.196Z</lastmod>
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-    <lastmod>2024-06-05T01:14:15.120Z</lastmod>
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diff --git a/workshops/00_setup.html b/workshops/00_setup.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/1.1_intro_nextflow.html b/workshops/1.1_intro_nextflow.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/1.2_intro_nf_core.html b/workshops/1.2_intro_nf_core.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.1_customise_and_run.html b/workshops/2.1_customise_and_run.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.2_troubleshooting.html b/workshops/2.2_troubleshooting.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/2.3_tips_and_tricks.html b/workshops/2.3_tips_and_tricks.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/3.1_creating_a_workflow.html b/workshops/3.1_creating_a_workflow.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>

diff --git a/workshops/4.1_draft_future_sess.html b/workshops/4.1_draft_future_sess.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
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diff --git a/workshops/4.1_modules.html b/workshops/4.1_modules.html
@@ -170,6 +170,10 @@
         <li>
     <a class="dropdown-item" href="../workshops/4.1_modules.html" rel="" target="">
  <span class="dropdown-text">Modularisation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../workshops/5.1_nf_core_template.html" rel="" target="">
+ <span class="dropdown-text">Nf-core Template</span></a>
   </li>  
     </ul>
   </li>