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Check documentation is clear on when to add WT control phenotype annotations #27

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CuzickA opened this issue Nov 21, 2022 · 3 comments

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@CuzickA
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CuzickA commented Nov 21, 2022

For PHI-base/curation#104

If not covered adequately in main Help documentation this may need adding to #10

No need to add WT pathogen or host genotype annotation.

Add WT metagenotype control annotations where possible, to aid interpretation of altered metagenotype annotations.

@CuzickA
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CuzickA commented Nov 22, 2022

Currently have this
https://canto.phi-base.org/docs/genotypes#metagenotype_management
image

Note: I don't think we state anywhere that there is 'No need to add WT pathogen or host control genotype annotations.' Some of this would be captured by GO annotations.

I might start up a new section in the Curations tips/ FAQ google Doc in #10 called 'Information not to curate' or similar.

@jseager7, The link in blue here doesn't seem to work in jumping to the correct section
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@jseager7
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The link in blue here doesn't seem to work in jumping to the correct section.

Thanks. I've fixed this in commit a134c04, but I still need to upload the changes to the website.

@CuzickA
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CuzickA commented May 19, 2023

Our new curator Maiara also tried to curate the WT controls during training for chemistry curation. I will add a section to the new FAQ file probably under 'information not to curate'.

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