feat(api, robot-server): Plate Reader CSV output functionality (#16495) #19454
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| # This workflow runs tests and lint on pull requests that touch the api/ | |
| # project or its CI configuration. | |
| name: 'API test/lint/deploy' | |
| on: | |
| # Most of the time, we run on pull requests, which lets us handle external PRs | |
| pull_request: | |
| paths: | |
| - 'api/**/*' | |
| - 'Makefile' | |
| - 'shared-data/**/*' | |
| - '!shared-data/js/**' | |
| - 'hardware/**/*' | |
| - 'scripts/**/*.mk' | |
| - 'scripts/**/*.py' | |
| - '.github/workflows/api-test-lint-deploy.yaml' | |
| - '.github/actions/python/**/*' | |
| - '.github/workflows/utils.js' | |
| push: | |
| paths: | |
| - 'api/**' | |
| - 'Makefile' | |
| - 'shared-data/**/*' | |
| - '!shared-data/js/**/*' | |
| - 'hardware/**/*' | |
| - 'scripts/**/*.mk' | |
| - 'scripts/**/*.py' | |
| - '.github/workflows/api-test-lint-deploy.yaml' | |
| - '.github/actions/python/**/*' | |
| - '.github/workflows/utils.js' | |
| branches: | |
| - 'edge' | |
| - 'release' | |
| - '*hotfix*' | |
| tags: | |
| - 'v*' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}-${{ github.ref_name != 'edge' || github.run_id}}-${{ github.ref_type != 'tag' || github.run_id }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| lint: | |
| name: 'opentrons package linting' | |
| timeout-minutes: 10 | |
| runs-on: 'ubuntu-22.04' | |
| steps: | |
| - uses: 'actions/checkout@v3' | |
| with: | |
| fetch-depth: 0 | |
| - uses: 'actions/setup-node@v3' | |
| with: | |
| node-version: '18.19.0' | |
| - uses: 'actions/setup-python@v4' | |
| with: | |
| python-version: '3.10' | |
| - uses: './.github/actions/python/setup' | |
| with: | |
| project: 'api' | |
| - name: Lint with opentrons_hardware | |
| run: make -C api lint | |
| test: | |
| name: 'opentrons package tests on ${{ matrix.os }}, python ${{ matrix.python }}' | |
| timeout-minutes: 30 | |
| needs: [lint] | |
| strategy: | |
| matrix: | |
| os: ['windows-2022', 'ubuntu-22.04', 'macos-latest'] | |
| # TODO(mc, 2022-02-24): expand this matrix to 3.8 and 3.9, | |
| # preferably in a nightly cronjob on edge or something | |
| python: ['3.10'] | |
| with-ot-hardware: ['true', 'false'] | |
| exclude: | |
| - os: 'windows-2022' | |
| with-ot-hardware: 'true' | |
| - os: 'macos-latest' | |
| with-ot-hardware: 'true' | |
| runs-on: '${{ matrix.os }}' | |
| steps: | |
| - uses: 'actions/checkout@v3' | |
| with: | |
| fetch-depth: 0 | |
| # https://github.com/actions/checkout/issues/290 | |
| - name: 'Fix actions/checkout odd handling of tags' | |
| if: startsWith(github.ref, 'refs/tags') | |
| run: | | |
| git fetch -f origin ${{ github.ref }}:${{ github.ref }} | |
| git checkout ${{ github.ref }} | |
| - uses: 'actions/setup-node@v3' | |
| with: | |
| node-version: '18.19.0' | |
| - uses: 'actions/setup-python@v4' | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: 'set complex environment variables' | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const { buildComplexEnvVars, } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`) | |
| buildComplexEnvVars(core, context) | |
| - uses: './.github/actions/python/setup' | |
| with: | |
| project: 'api' | |
| python-version: ${{ matrix.python }} | |
| - if: ${{ matrix.with-ot-hardware == 'false' }} | |
| name: Remove OT-3 hardware package | |
| run: make -C api setup-ot2 | |
| env: | |
| OT_VIRTUALENV_VERSION: ${{ matrix.python }} | |
| - if: ${{ matrix.with-ot-hardware == 'false' }} | |
| name: Test without opentrons_hardware | |
| run: make -C api test-ot2 | |
| - if: ${{ matrix.with-ot-hardware == 'true' }} | |
| name: Test with opentrons_hardware | |
| run: make -C api test-cov | |
| - name: Ensure assets build | |
| run: make -C api sdist wheel | |
| - name: Upload coverage report | |
| uses: 'codecov/codecov-action@v3' | |
| with: | |
| files: ./api/coverage.xml | |
| flags: api | |
| deploy: | |
| name: 'deploy opentrons package' | |
| needs: [test] | |
| runs-on: 'ubuntu-22.04' | |
| if: github.event_name == 'push' | |
| steps: | |
| - uses: 'actions/checkout@v3' | |
| with: | |
| fetch-depth: 0 | |
| # https://github.com/actions/checkout/issues/290 | |
| - name: 'Fix actions/checkout odd handling of tags' | |
| if: startsWith(github.ref, 'refs/tags') | |
| run: | | |
| git fetch -f origin ${{ github.ref }}:${{ github.ref }} | |
| git checkout ${{ github.ref }} | |
| - uses: 'actions/setup-node@v3' | |
| with: | |
| node-version: '18.19.0' | |
| - uses: 'actions/setup-python@v4' | |
| with: | |
| python-version: '3.10' | |
| - name: 'set complex environment variables' | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const { buildComplexEnvVars, } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`) | |
| buildComplexEnvVars(core, context) | |
| - uses: './.github/actions/python/setup' | |
| with: | |
| project: 'api' | |
| # creds and repository configuration for deploying python wheels | |
| - if: ${{ !env.OT_TAG }} | |
| name: 'upload to test pypi' | |
| uses: './.github/actions/python/pypi-deploy' | |
| with: | |
| project: 'api' | |
| repository_url: 'https://test.pypi.org/legacy/' | |
| password: '${{ secrets.TEST_PYPI_DEPLOY_TOKEN_OPENTRONS }}' | |
| - if: startsWith(env.OT_TAG, 'v') | |
| name: 'upload to real pypi' | |
| uses: './.github/actions/python/pypi-deploy' | |
| with: | |
| project: 'api' | |
| repository_url: 'https://upload.pypi.org/legacy/' | |
| password: '${{ secrets.PYPI_DEPLOY_TOKEN_OPENTRONS }}' |