Merge pull request #90 from OpenGATE/wheel_clustertools

Wheel clustertools
OpenGATE · Nov 22, 2024 · 1e43b11 · 1e43b11
2 parents 03c1ba7 + 07a2d46
commit 1e43b11
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Showing 22 changed files with 641 additions and 6 deletions.
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -0,0 +1,2 @@
+recursive-include gatetools/clustertools *.mac *.py *.sh *.job *.slurm
+
diff --git a/gatetools/clustertools/__init__.py b/gatetools/clustertools/__init__.py
diff --git a/clustertools/computeElapsedTime.py → gatetools/clustertools/computeElapsedTime.py b/clustertools/computeElapsedTime.py → gatetools/clustertools/computeElapsedTime.py
diff --git a/clustertools/example_opengate_run.py → ...ools/clustertools/example_opengate_run.py b/clustertools/example_opengate_run.py → ...ools/clustertools/example_opengate_run.py
diff --git a/clustertools/gate_common.sh → gatetools/clustertools/gate_common.sh b/clustertools/gate_common.sh → gatetools/clustertools/gate_common.sh
diff --git a/clustertools/gate_job_ccin2p3.job → gatetools/clustertools/gate_job_ccin2p3.job b/clustertools/gate_job_ccin2p3.job → gatetools/clustertools/gate_job_ccin2p3.job
diff --git a/clustertools/gate_job_ccin2p3.slurm → ...tools/clustertools/gate_job_ccin2p3.slurm b/clustertools/gate_job_ccin2p3.slurm → ...tools/clustertools/gate_job_ccin2p3.slurm
diff --git a/clustertools/gate_job_cluster.job → gatetools/clustertools/gate_job_cluster.job b/clustertools/gate_job_cluster.job → gatetools/clustertools/gate_job_cluster.job
diff --git a/clustertools/gate_job_idris.slurm → gatetools/clustertools/gate_job_idris.slurm b/clustertools/gate_job_idris.slurm → gatetools/clustertools/gate_job_idris.slurm
diff --git a/clustertools/gate_power_merge.sh → gatetools/clustertools/gate_power_merge.sh b/clustertools/gate_power_merge.sh → gatetools/clustertools/gate_power_merge.sh
diff --git a/clustertools/gate_split_and_run.py → gatetools/clustertools/gate_split_and_run.py b/clustertools/gate_split_and_run.py → gatetools/clustertools/gate_split_and_run.py
@@ -45,7 +45,7 @@ def runJobs(mac, jobs, env, splittime, output, alias, copydata, dry, qt, jobfile
 
     """
 
-    directoryJobFiles = os.path.dirname(os.path.realpath(__file__))
+    directoryJobFiles = os.path.join(os.path.dirname(os.path.realpath(gatetools.__file__)), "clustertools")
 
     # Source env file
     envCommand = ''

diff --git a/clustertools/mergeDoseByRegions.sh → gatetools/clustertools/mergeDoseByRegions.sh b/clustertools/mergeDoseByRegions.sh → gatetools/clustertools/mergeDoseByRegions.sh
diff --git a/clustertools/mergeDosePerEnergyFile.sh → ...ls/clustertools/mergeDosePerEnergyFile.sh b/clustertools/mergeDosePerEnergyFile.sh → ...ls/clustertools/mergeDosePerEnergyFile.sh
diff --git a/clustertools/mergeStatFile.py → gatetools/clustertools/mergeStatFile.py b/clustertools/mergeStatFile.py → gatetools/clustertools/mergeStatFile.py
diff --git a/clustertools/mergeStatFile.sh → gatetools/clustertools/mergeStatFile.sh b/clustertools/mergeStatFile.sh → gatetools/clustertools/mergeStatFile.sh
diff --git a/clustertools/opengate_job_ccin2p3.slurm → ...s/clustertools/opengate_job_ccin2p3.slurm b/clustertools/opengate_job_ccin2p3.slurm → ...s/clustertools/opengate_job_ccin2p3.slurm