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Contexts #6

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9aa3a12
Update for new computation environment routines.
chrispbradley Apr 10, 2018
43eb1a6
Merge branch 'develop' of https://github.com/OpenCMISS-Examples/canti…
chrispbradley Apr 11, 2018
9b0646e
Fixes for contexts.
chrispbradley Apr 27, 2018
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31 changes: 19 additions & 12 deletions src/fortran/cantilever.F90
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
!> Main program
PROGRAM CANTILEVEREXAMPLE
PROGRAM CantileverExample

USE OpenCMISS
USE OpenCMISS_Iron
Expand Down Expand Up @@ -60,7 +60,9 @@ PROGRAM CANTILEVEREXAMPLE
!CMISS variables
TYPE(cmfe_BasisType) :: DisplacementBasis,PressureBasis
TYPE(cmfe_BoundaryConditionsType) :: BoundaryConditions
TYPE(cmfe_CoordinateSystemType) :: CoordinateSystem, WorldCoordinateSystem
TYPE(cmfe_ComputationEnvironmentType) :: computationEnvironment
TYPE(cmfe_ContextType) :: context
TYPE(cmfe_CoordinateSystemType) :: CoordinateSystem
TYPE(cmfe_MeshType) :: Mesh
TYPE(cmfe_DecompositionType) :: Decomposition
TYPE(cmfe_EquationsType) :: Equations
Expand Down Expand Up @@ -94,8 +96,11 @@ PROGRAM CANTILEVEREXAMPLE
#endif

!Intialise cmiss
CALL cmfe_Initialise(WorldCoordinateSystem,WorldRegion,Err)
CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,Err)
CALL cmfe_Context_Initialise(context,err)
CALL cmfe_Initialise(context,err)
CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,err)
CALL cmfe_Region_Initialise(worldRegion,err)
CALL cmfe_Context_WorldRegionGet(context,worldRegion,err)
CALL cmfe_OutputSetOn("Cantilever",Err)

!Read in arguments and overwrite default values
Expand Down Expand Up @@ -163,14 +168,16 @@ PROGRAM CANTILEVEREXAMPLE
WRITE(*,'("Scaling type: ", i3)') ScalingType

!Get the number of computational nodes and this computational node number
CALL cmfe_ComputationalNumberOfNodesGet(NumberOfComputationalNodes,Err)
CALL cmfe_ComputationalNodeNumberGet(ComputationalNodeNumber,Err)
CALL cmfe_ComputationEnvironment_Initialise(computationEnvironment,err)
CALL cmfe_Context_ComputationEnvironmentGet(context,computationEnvironment,err)
CALL cmfe_ComputationEnvironment_NumberOfWorldNodesGet(computationEnvironment,numberOfComputationalNodes,err)
CALL cmfe_ComputationEnvironment_WorldNodeNumberGet(computationEnvironment,computationalNodeNumber,err)

NumberOfDomains=NumberOfComputationalNodes

!Create a 3D rectangular cartesian coordinate system
CALL cmfe_CoordinateSystem_Initialise(CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(CoordinateSystemUserNumber,CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(CoordinateSystemUserNumber,context,CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateFinish(CoordinateSystem,Err)

!Create a region and assign the coordinate system to the region
Expand All @@ -182,7 +189,7 @@ PROGRAM CANTILEVEREXAMPLE

!Define basis function for displacement
CALL cmfe_Basis_Initialise(DisplacementBasis,Err)
CALL cmfe_Basis_CreateStart(DisplacementBasisUserNumber,DisplacementBasis,Err)
CALL cmfe_Basis_CreateStart(DisplacementBasisUserNumber,context,DisplacementBasis,Err)
SELECT CASE(DisplacementInterpolationType)
CASE(1,2,3,4)
CALL cmfe_Basis_TypeSet(DisplacementBasis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
Expand All @@ -200,7 +207,7 @@ PROGRAM CANTILEVEREXAMPLE
IF(PressureMeshComponent/=1) THEN
!Basis for pressure
CALL cmfe_Basis_Initialise(PressureBasis,Err)
CALL cmfe_Basis_CreateStart(PressureBasisUserNumber,PressureBasis,Err)
CALL cmfe_Basis_CreateStart(PressureBasisUserNumber,context,PressureBasis,Err)
SELECT CASE(PressureInterpolationType)
CASE(1,2,3,4)
CALL cmfe_Basis_TypeSet(PressureBasis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
Expand Down Expand Up @@ -342,7 +349,7 @@ PROGRAM CANTILEVEREXAMPLE

!Define the problem
CALL cmfe_Problem_Initialise(Problem,Err)
CALL cmfe_Problem_CreateStart(ProblemUserNumber,[CMFE_PROBLEM_ELASTICITY_CLASS,CMFE_PROBLEM_FINITE_ELASTICITY_TYPE, &
CALL cmfe_Problem_CreateStart(ProblemUserNumber,context,[CMFE_PROBLEM_ELASTICITY_CLASS,CMFE_PROBLEM_FINITE_ELASTICITY_TYPE, &
& CMFE_PROBLEM_NO_SUBTYPE],Problem,Err)
CALL cmfe_Problem_CreateFinish(Problem,Err)

Expand Down Expand Up @@ -419,7 +426,7 @@ PROGRAM CANTILEVEREXAMPLE
CALL cmfe_Fields_ElementsExport(Fields,"./results/Cantilever","FORTRAN",Err)
CALL cmfe_Fields_Finalise(Fields,Err)

CALL cmfe_Finalise(Err)
CALL cmfe_Finalise(context,Err)

WRITE(*,'(A)') "Program successfully completed."

Expand All @@ -434,5 +441,5 @@ SUBROUTINE HANDLE_ERROR(ERROR_STRING)
STOP
END SUBROUTINE HANDLE_ERROR

END PROGRAM CANTILEVEREXAMPLE
END PROGRAM CantileverExample

19 changes: 12 additions & 7 deletions src/python/cantilever.py
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,9 @@
equationsSetUserNumber = 1
problemUserNumber = 1

worldRegion = iron.Region()
iron.Context.WorldRegionGet(worldRegion)

# Set all diganostic levels on for testing
#iron.DiagnosticsSetOn(iron.DiagnosticTypes.All,[1,2,3,4,5],"Diagnostics",["DOMAIN_MAPPINGS_LOCAL_FROM_GLOBAL_CALCULATE"])

Expand All @@ -45,12 +48,14 @@
numberOfXi = 3

# Get the number of computational nodes and this computational node number
numberOfComputationalNodes = iron.ComputationalNumberOfNodesGet()
computationalNodeNumber = iron.ComputationalNodeNumberGet()
computationEnvironment = iron.ComputationEnvironment()
iron.Context.ComputationEnvironmentGet(computationEnvironment)
numberOfComputationalNodes = computationEnvironment.NumberOfWorldNodesGet()
computationalNodeNumber = computationEnvironment.WorldNodeNumberGet()

# Create a 3D rectangular cartesian coordinate system
coordinateSystem = iron.CoordinateSystem()
coordinateSystem.CreateStart(coordinateSystemUserNumber)
coordinateSystem.CreateStart(coordinateSystemUserNumber,iron.Context)
coordinateSystem.DimensionSet(3)
coordinateSystem.CreateFinish()

Expand All @@ -63,7 +68,7 @@

# Define basis
basis = iron.Basis()
basis.CreateStart(basisUserNumber)
basis.CreateStart(basisUserNumber,iron.Context)
if InterpolationType in (1,2,3,4):
basis.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
elif InterpolationType in (7,8,9):
Expand All @@ -77,7 +82,7 @@
if(usePressureBasis):
# Define pressure basis
pressureBasis = iron.Basis()
pressureBasis.CreateStart(pressureBasisUserNumber)
pressureBasis.CreateStart(pressureBasisUserNumber,iron.Context)
if InterpolationType in (1,2,3,4):
pressureBasis.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
elif InterpolationType in (7,8,9):
Expand Down Expand Up @@ -225,7 +230,7 @@
problemSpecification = [iron.ProblemClasses.ELASTICITY,
iron.ProblemTypes.FINITE_ELASTICITY,
iron.ProblemSubtypes.NONE]
problem.CreateStart(problemUserNumber, problemSpecification)
problem.CreateStart(problemUserNumber,iron.Context,problemSpecification)
problem.CreateFinish()

# Create the problem control loop
Expand All @@ -240,7 +245,7 @@
linearSolver = iron.Solver()
problem.SolversCreateStart()
problem.SolverGet([iron.ControlLoopIdentifiers.NODE],1,nonLinearSolver)
nonLinearSolver.outputType = iron.SolverOutputTypes.PROGRESS
nonLinearSolver.outputType = iron.SolverOutputTypes.MONITOR
nonLinearSolver.NewtonJacobianCalculationTypeSet(iron.JacobianCalculationTypes.FD)
nonLinearSolver.NewtonAbsoluteToleranceSet(1e-14)
nonLinearSolver.NewtonSolutionToleranceSet(1e-14)
Expand Down