Reintegrate changes in develop #2668
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…s BB in PK-Sim (#2442)
* waiting for Core PR to be accepted * nugets updated * updating nuget
* initial try * temp nuget update * adjusting mapper * Fixes #2344 Implement "Parameter Value Export" for Expression Profiles BB in PK-Sim (#2442) * use GetAllChildren of Individual (#2445) * 2438 outptu mappings not cleared (#2444) * waiting for Core PR to be accepted * nugets updated * updating nuget * temp nuget update * working export * spacing * updating packages * do not map object path for 'ROOT' * do not repeat formulae in the formula cache * adding tests * fixing test * correction * consolidate assets * correcting nugets * code review changes * code review * PR feedback * update core version * Appveyor builds turned on * PR feedback * pr feedback Co-authored-by: Robert McIntosh <[email protected]>
* #784_expression_profile_from_pksim * updating with mapper * Fixes #2475 Create expression profile from PK-sim * add dimensions as resource for tests * Add pkparameters for test project * add sqlite db * PR feedback
* work in progress * work in progress * Revise to map origin data as strings instead of keeping a common OriginData class * Update core and mapping of origin data * Testing the mapper * testing the mapper * revert an unintentional change * PR Feedback
--------- Co-authored-by: Robert McIntosh <[email protected]>
* Fixes #2439 Misleading info in global POP PK Analysis if no parameter… (#2459) * Fixes #2439 Misleading info in global POP PK Analysis if no parameters can be calculated * PR feedback * Fixes #2469 show hidden entities (#2488) * Fixes buil failing (#2489) * Fixes #2495 failing tests (#2499) * Fixes #2485 observed added mobi (#2500) * Fixes #2484 bug when exporting pop simulation (#2503) * Fixes #2275 #2279 #2277 by updating OSPSuite.Core (#2506) * Fixes #2405 mapping lost after configure (#2507) * Fixes #2255 resetting concentration issue (#2512) * Fixes #2255 resetting concentration issue * Small update to stay symetrical * Update MoleculeExpressionTask.cs * Modify the comment to reflect population Co-authored-by: Robert McIntosh <[email protected]> * update core (#2514) * Prepare for v11_1 (#2515) * Fixes #2516 Cannot run population simulations imported from pkml (#2517) * Fixes #2516 Cannot run population simulations imported from pkml * PR feedback * Fixes #2518 11.1 Cannot show PK-Analysis in a population simulations … (#2520) * Fixes #2518 11.1 Cannot show PK-Analysis in a population simulations imported from pkml * PR feedback * PR feedback * Updated OSPSuite.Core and OSPSuite.BuildingBlockTemplates (#2524) * Updated OSPSuite.Core and OSPSuite.BuildingBlockTemplates * Updated OSPSuite.Core again Co-authored-by: Yuri05 <[email protected]> * Update documentation v11.1 * Fixes #2553 pksim changes molecule name (#2561) * Fixes #2536 loading project from snapshot observed data (#2560) * Fixes #2536 loading project from snapshot observed data * Fixes #2536 loading project from snapshot observed data * Fixes #2536 loading project from snapshot observed data * Fixes #2558 project created with v10< do not export properly (#2559) * Fixes #2563 notification weird column no image data (#2564) * Try update core * Update to latest core * More work to make sure we can still load indiviudals * Remove creation of PSV for simulation * Fixes test project" * Fixes test project" * No more psv --------- Co-authored-by: Robert McIntosh <[email protected]> Co-authored-by: Juri Solodenko <[email protected]> Co-authored-by: Yuri05 <[email protected]>
…ntation to core (#2572)
* WIP #2569 use Individual Building block and module from core * Some local variable rename. Build configuration not used anymore * Map also indiviudal and expression building block. Needs #2570 to compile * More work on #2569 to make test pass again: * Fixes #2569 use of individual building blocks * Fixes #2569 use individual building block and module from core
# Conflicts: # src/PKSim.Assets.Images/PKSim.Assets.Images.csproj # src/PKSim.Assets/PKSim.Assets.csproj # src/PKSim.BatchTool/PKSim.BatchTool.csproj # src/PKSim.CLI.Core/PKSim.CLI.Core.csproj # src/PKSim.CLI/PKSim.CLI.csproj # src/PKSim.Core/Mappers/RangeChartDataToDataTableMapper.cs # src/PKSim.Core/PKSim.Core.csproj # src/PKSim.Infrastructure/PKSim.Infrastructure.csproj # src/PKSim.Matlab/PKSim.Matlab.csproj # src/PKSim.Presentation/PKSim.Presentation.csproj # src/PKSim.R/PKSim.R.csproj # src/PKSim.UI/PKSim.UI.csproj # src/PKSim/PKSim.csproj # tests/PKSim.Matlab.Tests/PKSim.Matlab.Tests.csproj # tests/PKSim.R.Tests/PKSim.R.Tests.csproj # tests/PKSim.Tests/Core/SimulationPersistableUpdaterSpecs.cs # tests/PKSim.Tests/Data/expression_and_individual_V10.pksim5 # tests/PKSim.Tests/PKSim.Tests.csproj # tests/PKSim.UI.Starter/PKSim.UI.Starter.csproj # tests/PKSim.UI.Tests/PKSim.UI.Tests.csproj
* Added views to DB * DB - adjusted naming of view and columns * Fixes #2586 Provide info which parameters are not common for all species * Fixes #2586 Provide info which parameters are not common for all species * review comments * Add serializer for the new dummy type --------- Co-authored-by: Yuri05 <[email protected]>
* Fixes update core * Fixes weird definition
…nc (#2620) * Some rename first * Add test showing issue with #2615 * Update to algorithm to match specificaitons * Move logic of disease state to own view * Fixes #2615 overriding ref conc * Update DiseaseStateDTO.cs just a typo * Fixes failing test * Fixes #2615 overriding ref conc --------- Co-authored-by: Robert McIntosh <[email protected]>
* Update to 12.0.178 * update to 12.0.178 * Update core
…ecule types (#2659) * Too many molecules in molecules list for some observers * Do not change container observer type to Drug
* WIP #2532 * fix using the wrong assertion * Add default parameters to all molecules * add parameter to actual proten * Also add the parmaeter values * add reference to tablews * WIP #2532 ontogeny factor in expression profile * WIP #2532 ontogeny factor * WIP #2532 ontogeny factor * Rename db field * Make PMA only human dependent
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