Merge pull request #100 from OHDSI/97-chore-update-seed-column-metadata

dbt_project.yml

@@ -32,78 +32,3 @@ seeds:
     synthea:
       +enabled: true
       +schema: synthea_seeds
-      allergies:
-        +column_types:
-          CODE: varchar
-          REACTION1: varchar
-      careplans:
-        +column_types:
-          CODE: varchar
-          REASONCODE: varchar
-      claims_transactions:
-        +column_types:
-          PROCEDURECODE: varchar
-          AMOUNT: numeric
-          UNITAMOUNT: numeric
-          PAYMENTS: numeric
-          ADJUSTMENTS: numeric
-          TRANSFERS: numeric
-          OUTSTANDING: numeric
-      claims:
-        +column_types:
-          DIAGNOSIS1: varchar
-          DIAGNOSIS2: varchar
-          DIAGNOSIS3: varchar
-          DIAGNOSIS4: varchar
-          DIAGNOSIS5: varchar
-          DIAGNOSIS6: varchar
-          DIAGNOSIS7: varchar
-          DIAGNOSIS8: varchar
-          REFERRINGPROVIDERID: varchar
-      conditions:
-        +column_types:
-          CODE: varchar
-      devices:
-        +column_types:
-          CODE: varchar
-          STOP: timestamp
-      encounters:
-        +column_types:
-          CODE: varchar
-          REASONCODE: varchar
-          BASE_ENCOUNTER_COST: numeric
-          TOTAL_CLAIM_COST: numeric
-          PAYER_COVERAGE: numeric
-      imaging_studies:
-        +column_types:
-          CODE: varchar
-          BODYSITE_CODE: varchar
-          MODALITY_CODE: varchar
-          SOP_CODE: varchar
-          PROCEDURE_CODE: varchar
-      immunizations:
-        +column_types:
-          CODE: varchar
-          BASE_COST: numeric
-      medications:
-        +column_types:
-          CODE: varchar
-          REASONCODE: varchar
-          BASE_COST: numeric
-          PAYER_COVERAGE: numeric
-          TOTALCOST: numeric
-      observations:
-        +column_types:
-          CODE: varchar
-      patients:
-        +column_types:
-          SUFFIX: varchar
-          ZIP: varchar
-      procedures:
-        +column_types:
-          CODE: varchar
-          REASONCODE: varchar
-          BASE_COST: numeric
-      supplies:
-        +column_types:
-          CODE: varchar

seeds/synthea/_sources.yml

@@ -0,0 +1,303 @@
+seeds:
+  - name: allergies
+    config:
+      column_types:
+        START: date
+        STOP: date
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        SYSTEM: varchar
+        DESCRIPTION: varchar
+        TYPE: varchar
+        CATEGORY: varchar
+        REACTION1: varchar
+        DESCRIPTION1: varchar
+        SEVERITY1: varchar
+        REACTION2: varchar
+        DESCRIPTION2: varchar
+        SEVERITY2: varchar
+  - name: careplans
+    config:
+      column_types:
+        ID: varchar
+        START: date
+        STOP: date
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        REASONCODE: varchar
+        REASONDESCRIPTION: varchar
+  - name: claims
+    config:
+      column_types:
+        ID: varchar
+        PATIENTID: varchar
+        PROVIDERID: varchar
+        PRIMARYPATIENTINSURANCEID: varchar
+        SECONDARYPATIENTINSURANCEID: varchar
+        DEPARTMENTID: integer
+        PATIENTDEPARTMENTID: integer
+        DIAGNOSIS1: varchar
+        DIAGNOSIS2: varchar
+        DIAGNOSIS3: varchar
+        DIAGNOSIS4: varchar
+        DIAGNOSIS5: varchar
+        DIAGNOSIS6: varchar
+        DIAGNOSIS7: varchar
+        DIAGNOSIS8: varchar
+        REFERRINGPROVIDERID: varchar
+        APPOINTMENTID: varchar
+        CURRENTILLNESSDATE: timestamp
+        SERVICEDATE: timestamp
+        SUPERVISINGPROVIDERID: varchar
+        STATUS1: varchar
+        STATUS2: varchar
+        STATUSP: varchar
+        OUTSTANDING1: float
+        OUTSTANDING2: float
+        OUTSTANDINGP: float
+        LASTBILLEDDATE1: timestamp
+        LASTBILLEDDATE2: timestamp
+        LASTBILLEDDATEP: timestamp
+        HEALTHCARECLAIMTYPEID1: integer
+        HEALTHCARECLAIMTYPEID2: integer
+  - name: claims_transactions
+    config:
+      column_types:
+        ID: varchar
+        CLAIMID: varchar
+        CHARGEID: integer
+        PATIENTID: varchar
+        TYPE: varchar
+        AMOUNT: float
+        METHOD: varchar
+        FROMDATE: timestamp
+        TODATE: timestamp
+        PLACEOFSERVICE: varchar
+        PROCEDURECODE: varchar
+        MODIFIER1: varchar
+        MODIFIER2: varchar
+        DIAGNOSISREF1: integer
+        DIAGNOSISREF2: integer
+        DIAGNOSISREF3: integer
+        DIAGNOSISREF4: integer
+        UNITS: integer
+        DEPARTMENTID: integer
+        NOTES: varchar
+        UNITAMOUNT: float
+        TRANSFEROUTID: integer
+        TRANSFERTYPE: varchar
+        PAYMENTS: float
+        ADJUSTMENTS: float
+        TRANSFERS: float
+        OUTSTANDING: float
+        APPOINTMENTID: varchar
+        LINENOTE: varchar
+        PATIENTINSURANCEID: varchar
+        FEESCHEDULEID: integer
+        PROVIDERID: varchar
+        SUPERVISINGPROVIDERID: varchar
+  - name: conditions
+    config:
+      column_types:
+        START: date
+        STOP: date
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+  - name: devices
+    config:
+      column_types:
+        START: timestamp
+        STOP: timestamp
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        UDI: varchar
+  - name: encounters
+    config:
+      column_types:
+        ID: varchar
+        START: timestamp
+        STOP: timestamp
+        PATIENT: varchar
+        ORGANIZATION: varchar
+        PROVIDER: varchar
+        PAYER: varchar
+        ENCOUNTERCLASS: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        BASE_ENCOUNTER_COST: float
+        TOTAL_CLAIM_COST: float
+        PAYER_COVERAGE: float
+        REASONCODE: varchar
+        REASONDESCRIPTION: varchar
+  - name: imaging_studies
+    config:
+      column_types:
+        ID: varchar
+        DATE: timestamp
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        SERIES_UID: varchar
+        BODYSITE_CODE: varchar
+        BODYSITE_DESCRIPTION: varchar
+        MODALITY_CODE: varchar
+        MODALITY_DESCRIPTION: varchar
+        INSTANCE_UID: varchar
+        SOP_CODE: varchar
+        SOP_DESCRIPTION: varchar
+        PROCEDURE_CODE: varchar
+  - name: immunizations
+    config:
+      column_types:
+        DATE: timestamp
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        BASE_COST: float
+  - name: medications
+    config:
+      column_types:
+        START: timestamp
+        STOP: timestamp
+        PATIENT: varchar
+        PAYER: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        BASE_COST: float
+        PAYER_COVERAGE: float
+        DISPENSES: integer
+        TOTALCOST: float
+        REASONCODE: varchar
+        REASONDESCRIPTION: varchar
+  - name: observations
+    config:
+      column_types:
+        DATE: timestamp
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CATEGORY: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        VALUE: varchar
+        UNITS: varchar
+        TYPE: varchar
+  - name: organizations
+    config:
+      column_types:
+        ID: varchar
+        NAME: varchar
+        ADDRESS: varchar
+        CITY: varchar
+        STATE: varchar
+        ZIP: varchar
+        LAT: float
+        LON: float
+        PHONE: varchar
+        REVENUE: float
+        UTILIZATION: integer
+  - name: patients
+    config:
+      column_types:
+        ID: varchar
+        BIRTHDATE: date
+        DEATHDATE: date
+        SSN: varchar
+        DRIVERS: varchar
+        PASSPORT: varchar
+        PREFIX: varchar
+        FIRST: varchar
+        LAST: varchar
+        SUFFIX: varchar
+        MAIDEN: varchar
+        MARITAL: varchar
+        RACE: varchar
+        ETHNICITY: varchar
+        GENDER: varchar
+        BIRTHPLACE: varchar
+        ADDRESS: varchar
+        CITY: varchar
+        STATE: varchar
+        COUNTY: varchar
+        ZIP: varchar
+        LAT: float
+        LON: float
+        HEALTHCARE_EXPENSES: float
+        HEALTHCARE_COVERAGE: float
+  - name: payer_transitions
+    config:
+      column_types:
+        PATIENT: varchar
+        MEMBERID: varchar
+        START_YEAR: timestamp
+        END_YEAR: timestamp
+        PAYER: varchar
+        SECONDARY_PAYER: varchar
+        OWNERSHIP: varchar
+        OWNERNAME: varchar
+  - name: payers
+    config:
+      column_types:
+        ID: varchar
+        NAME: varchar
+        ADDRESS: varchar
+        CITY: varchar
+        STATE_HEADQUARTERED: varchar
+        ZIP: integer
+        PHONE: varchar
+        AMOUNT_COVERED: float
+        AMOUNT_UNCOVERED: float
+        REVENUE: float
+        COVERED_ENCOUNTERS: integer
+        UNCOVERED_ENCOUNTERS: integer
+        COVERED_MEDICATIONS: integer
+        UNCOVERED_MEDICATIONS: integer
+        COVERED_PROCEDURES: integer
+        UNCOVERED_PROCEDURES: integer
+        COVERED_IMMUNIZATIONS: integer
+        UNCOVERED_IMMUNIZATIONS: integer
+        UNIQUE_CUSTOMERS: integer
+        QOLS_AVG: float
+        MEMBER_MONTHS: integer
+  - name: procedures
+    config:
+      column_types:
+        START: timestamp
+        STOP: timestamp
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        BASE_COST: float
+        REASONCODE: varchar
+        REASONDESCRIPTION: varchar
+  - name: providers
+    config:
+      column_types:
+        ID: varchar
+        ORGANIZATION: varchar
+        NAME: varchar
+        GENDER: varchar
+        SPECIALITY: varchar
+        ADDRESS: varchar
+        CITY: varchar
+        STATE: varchar
+        ZIP: varchar
+        LAT: float
+        LON: float
+        UTILIZATION: integer
+  - name: supplies
+    config:
+      column_types:
+        DATE: date
+        PATIENT: varchar
+        ENCOUNTER: varchar
+        CODE: varchar
+        DESCRIPTION: varchar
+        QUANTITY: integer