Merge pull request #112 from OHDSI/summariseUnmappedCodes

unmapped codes
OHDSI · Nov 14, 2024 · 3e7ef8b · 3e7ef8b
2 parents 9c969c1 + 4c8da0d
commit 3e7ef8b
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/R/codelistDiagnostics.R b/R/codelistDiagnostics.R
@@ -113,6 +113,12 @@ codelistDiagnostics <- function(cohort){
   cli::cli_bullets(c("*" = "Getting code counts in database based on achilles"))
   results[[paste0("achilles_code_use")]] <- CodelistGenerator::summariseAchillesCodeUse(x = all_codelists, cdm = cdm)
 
+  cli::cli_bullets(c("*" = "Getting unmapped concepts"))
+  results[[paste0("unmapped_codes", i)]] <- CodelistGenerator::summariseUnmappedCodes(
+    x = all_codelists,
+    cdm = cdm
+  )
+
   cli::cli_bullets(c("*" = "Getting orphan concepts"))
   results[[paste0("orphan_codes", i)]] <- CodelistGenerator::summariseOrphanCodes(
       x = all_codelists,