Addresses cdm proposal #84

OHDSI · Jul 14, 2017 · 19150d2 · 19150d2
1 parent 17d0bfc
commit 19150d2
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Showing 9 changed files with 25 additions and 6 deletions.
diff --git a/Impala/OMOP_CDM_ddl_Impala.sql b/Impala/OMOP_CDM_ddl_Impala.sql
@@ -420,7 +420,9 @@ CREATE TABLE condition_occurrence (
  provider_id INTEGER,
  visit_occurrence_id INTEGER,
  condition_source_value VARCHAR(50),
- condition_source_concept_id INTEGER
+ condition_source_concept_id INTEGER,
+ condition_status_source_value VARCHAR(50),
+ condition_status_concept_id INTEGER
 )
 ROW FORMAT DELIMITED FIELDS TERMINATED BY ','
 TBLPROPERTIES ("skip.header.line.count"="1")

diff --git a/Impala/OMOP_Parquet_v5.2.sql b/Impala/OMOP_Parquet_v5.2.sql
@@ -304,7 +304,9 @@ SELECT
  provider_id,
  visit_occurrence_id,
  condition_source_value,
- condition_source_concept_id
+ condition_source_concept_id,
+ condition_status_source_value,
+ condition_status_concept_id
 FROM omop_cdm.condition_occurrence;
 
 CREATE TABLE omop_cdm_parquet.measurement

diff --git a/Oracle/OMOP CDM constraints - Oracle.sql b/Oracle/OMOP CDM constraints - Oracle.sql
@@ -385,6 +385,8 @@ ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_visit FOREIGN KEY
 
 ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_concept_s FOREIGN KEY (condition_source_concept_id)  REFERENCES concept (concept_id);
 
+ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_status_concept FOREIGN KEY (condition_status_concept_id) REFERENCES concept (concept_id);
+
 
 ALTER TABLE measurement ADD CONSTRAINT fpk_measurement_person FOREIGN KEY (person_id)  REFERENCES person (person_id);
 

diff --git a/Oracle/OMOP CDM ddl - Oracle.sql b/Oracle/OMOP CDM ddl - Oracle.sql
@@ -405,7 +405,9 @@ CREATE TABLE condition_occurrence
      provider_id					INTEGER			NULL , 
      visit_occurrence_id			INTEGER			NULL , 
      condition_source_value			VARCHAR(50)		NULL ,
-	 condition_source_concept_id	INTEGER			NULL
+	 condition_source_concept_id	INTEGER			NULL ,
+	 condition_status_source_value	VARCHAR(50)		NULL ,
+     condition_status_concept_id	INTEGER			NULL 
     ) 
 ;
 

diff --git a/PostgreSQL/OMOP CDM constraints - PostgreSQL.sql b/PostgreSQL/OMOP CDM constraints - PostgreSQL.sql
@@ -384,6 +384,8 @@ ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_visit FOREIGN KEY
 
 ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_concept_s FOREIGN KEY (condition_source_concept_id)  REFERENCES concept (concept_id);
 
+ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_status_concept FOREIGN KEY (condition_status_concept_id) REFERENCES concept (concept_id);
+
 
 ALTER TABLE measurement ADD CONSTRAINT fpk_measurement_person FOREIGN KEY (person_id)  REFERENCES person (person_id);
 

diff --git a/PostgreSQL/OMOP CDM ddl - PostgreSQL.sql b/PostgreSQL/OMOP CDM ddl - PostgreSQL.sql
@@ -405,7 +405,9 @@ CREATE TABLE condition_occurrence
      provider_id					INTEGER			NULL , 
      visit_occurrence_id			INTEGER			NULL , 
      condition_source_value			VARCHAR(50)		NULL ,
-	 condition_source_concept_id	INTEGER			NULL
+	 condition_source_concept_id	INTEGER			NULL ,
+	 condition_status_source_value	VARCHAR(50)		NULL ,
+     condition_status_concept_id	INTEGER			NULL 
     ) 
 ;
 

diff --git a/README.md b/README.md
@@ -9,13 +9,16 @@ Release Notes for v5.2.0
 This version is based on the CDM working group proposals:
 * [#71](https://github.com/OHDSI/CommonDataModel/issues/71) Adds the field VERBATIM_END_DATE to DRUG_EXPOSURE and makes DRUG_EXPOSURE_END_DATE a required field
 * [#73](https://github.com/OHDSI/CommonDataModel/issues/73) Removes EFFECTIVE_DRUG_DOSE and DOSE_UNIT_CONCEPT_ID from DRUG_EXPOSURE
-* [#75] (https://github.com/OHDSI/CommonDataModel/issues/75) Adds the field BOX_SIZE to DRUG_STRENGTH
+* [#75](https://github.com/OHDSI/CommonDataModel/issues/75) Adds the field BOX_SIZE to DRUG_STRENGTH
 * [#83](https://github.com/OHDSI/CommonDataModel/issues/83) Adds the following fields to VISIT_OCCURRENCE:
   * ADMITTING_SOURCE_CONCEPT_ID
   * ADMITTING_SOURCE_VALUE
   * DISCHARGE_TO_CONCEPT_ID
   * DISCHARGE_TO_SOURCE_VALUE
   * PRECEDING_VISIT_OCCURRENCE_ID
+* [#84](https://github.com/OHDSI/CommonDataModel/issues/84) Adds the following fields to CONDITION_OCCURRENCE:
+  * CONDITION_STATUS_CONCEPT_ID
+  * CONDITION_STATUS_SOURCE_VALUE
 
   and is **backwards compatibile with v5.0.1**. The proposed and accepted changes include adding a datetime field to every table that had a date column and adding field DENOMINATOR_VALUE to the DRUG_STRENGTH table. These were the new columns added:
 

diff --git a/Sql Server/OMOP CDM constraints - SQL Server.sql b/Sql Server/OMOP CDM constraints - SQL Server.sql
@@ -384,6 +384,8 @@ ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_visit FOREIGN KEY
 
 ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_concept_s FOREIGN KEY (condition_source_concept_id)  REFERENCES concept (concept_id);
 
+ALTER TABLE condition_occurrence ADD CONSTRAINT fpk_condition_status_concept FOREIGN KEY (condition_status_concept_id) REFERENCES concept (concept_id);
+
 
 ALTER TABLE measurement ADD CONSTRAINT fpk_measurement_person FOREIGN KEY (person_id)  REFERENCES person (person_id);
 

diff --git a/Sql Server/OMOP CDM ddl - SQL Server.sql b/Sql Server/OMOP CDM ddl - SQL Server.sql
@@ -405,7 +405,9 @@ CREATE TABLE condition_occurrence
   provider_id					INTEGER			NULL ,
   visit_occurrence_id			INTEGER			NULL ,
   condition_source_value		VARCHAR(50)		NULL ,
-  condition_source_concept_id	INTEGER			NULL
+  condition_source_concept_id	INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)		NULL ,
+  condition_status_concept_id	INTEGER			NULL 
 )
 ;