Improving aggregate

DESCRIPTION

@@ -1,11 +1,12 @@
 Package: Characterization
 Type: Package
 Title: Characterizations of Cohorts
-Version: 0.2.0
-Date: 2024-04-03
+Version: 0.3.1
+Date: 2024-04-25
 Authors@R: c(
 	person("Jenna", "Reps", , "[email protected]", role = c("aut", "cre")),
-	person("Patrick", "Ryan", , "[email protected]", role = c("aut"))
+	person("Patrick", "Ryan", , "[email protected]", role = c("aut")),
+	person("Chris", "Knoll", , "[email protected]", role = c("aut"))
 	)
 Maintainer: Jenna Reps <[email protected]>
 Description: Various characterizations of target and outcome cohorts.
@@ -17,30 +18,32 @@ Depends:
 Imports:
   Andromeda,
 	DatabaseConnector (>= 6.3.1),
+	digest,
 	FeatureExtraction  (>= 3.5.0),
 	SqlRender (>= 1.9.0),
 	ParallelLogger (>= 3.0.0),
+	ResultModelManager,
 	checkmate,
 	dplyr,
 	readr, 
 	rlang
 Suggests:
   devtools,
+  formatR,
 	testthat,
 	Eunomia,
 	kableExtra,
 	knitr,
 	markdown,
-	ResultModelManager,
+	rmarkdown,
 	ShinyAppBuilder,
 	shiny,
 	withr
 Remotes:
 	ohdsi/FeatureExtraction,
 	ohdsi/Eunomia,
 	ohdsi/ResultModelManager,
-	ohdsi/ShinyAppBuilder,
-	ohdsi/DatabaseConnector
+	ohdsi/ShinyAppBuilder
 NeedsCompilation: no
 RoxygenNote: 7.3.1
 Encoding: UTF-8

NAMESPACE

@@ -8,13 +8,15 @@ export(createAggregateCovariateSettings)
 export(createCharacterizationSettings)
 export(createCharacterizationTables)
 export(createDechallengeRechallengeSettings)
+export(createDuringCovariateSettings)
 export(createSqliteDatabase)
 export(createTimeToEventSettings)
 export(exportAggregateCovariateToCsv)
 export(exportDatabaseToCsv)
 export(exportDechallengeRechallengeToCsv)
 export(exportRechallengeFailCaseSeriesToCsv)
 export(exportTimeToEventToCsv)
+export(getDbDuringCovariateData)
 export(loadAggregateCovariateAnalyses)
 export(loadCharacterizationSettings)
 export(loadDechallengeRechallengeAnalyses)

NEWS.md

@@ -1,3 +1,19 @@
+Characterization 0.3.1
+======================
+- Removed DatabaseConnector from Remotes in DESCRIPTION. Fixes GitHb issue 38.
+- Added check to covariateSettings input in createAggregateCovariateSettings to error if temporal is T
+- adding during cohort covariate settings
+- added a case covariate settings inputs to aggregate covariates
+- added casePreTargetDuration and casePostTreatmentDuration integer inputs to aggregate covariates
+
+Characterization 0.3.0
+======================
+- Added new outcomeWashoutDays parameter to createAggregateCovariateSettings to remove outcome occurances that are continuations of a prior outcome occurrence
+- Changed the way cohort definition ids are created in createAggregateCovariateSettings to use hash of target id, outcome id and type.  This lets users combine different studies into a single result database.
+- Added database migration capability and created new migrations for the recent updates.
+
+
+
 Characterization 0.2.0
 ======================
 Updated dependency to FeatureExtraction (>= 3.5.0) to support minCharacterizationMean paramater.