Docker image for Jupyterhub NIRD toolkit.
esmvalTool is available in the esmvaltool conda environment in the jupyterhub.
Open a terminal in the Jupyterhub:
source activate esmvaltool
python -m ipykernel install --user --name=esmvaltool
Then restart your server to see esmvaltool environment (as shown on the figure below).
Open a terminal in the jupyterhub to setup your environment.
source activate esmvaltool
esmvaltool --help
The help returns:
usage: esmvaltool [-h] [-v] [-c CONFIG_FILE] [-s] [--max-datasets MAX_DATASETS] [--max-years MAX_YEARS] [--skip-nonexistent] [--diagnostics [DIAGNOSTICS [DIAGNOSTICS ...]]] recipe
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| |___ ___) | | | | \ V / (_| | | | | (_) | (_) | |
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ESMValTool - Earth System Model Evaluation Tool.
http://www.esmvaltool.org
CORE DEVELOPMENT TEAM AND CONTACTS:
Veronika Eyring (PI; DLR, Germany - [email protected])
Bouwe Andela (NLESC, Netherlands - [email protected])
Bjoern Broetz (DLR, Germany - [email protected])
Lee de Mora (PML, UK - [email protected])
Niels Drost (NLESC, Netherlands - [email protected])
Nikolay Koldunov (AWI, Germany - [email protected])
Axel Lauer (DLR, Germany - [email protected])
Benjamin Mueller (LMU, Germany - [email protected])
Valeriu Predoi (URead, UK - [email protected])
Mattia Righi (DLR, Germany - [email protected])
Manuel Schlund (DLR, Germany - [email protected])
Javier Vegas-Regidor (BSC, Spain - [email protected])
For further help, please read the documentation at
http://esmvaltool.readthedocs.io. Have fun!
positional arguments:
recipe Path or name of the yaml recipe file
optional arguments:
-h, --help show this help message and exit
-v, --version return ESMValTool's version number and exit
-c CONFIG_FILE, --config-file CONFIG_FILE
Config file
-s, --synda-download Download input data using synda. This requires a working synda installation.
--max-datasets MAX_DATASETS
Try to limit the number of datasets used to MAX_DATASETS.
--max-years MAX_YEARS
Limit the number of years to MAX_YEARS.
--skip-nonexistent Skip datasets that cannot be found.
--diagnostics [DIAGNOSTICS [DIAGNOSTICS ...]]
Only run the named diagnostics from the recipe.
This command needs to be repeated everytime you start a new terminal.