Merge pull request #413 from NationalGenomicsInfrastructure/monthly

Monthly Merge April 2021
NationalGenomicsInfrastructure · Apr 26, 2021 · 28e238c · 28e238c
2 parents c85a688 + 680b6fe
commit 28e238c
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Showing 4 changed files with 7 additions and 12 deletions.
diff --git a/roles/multiqc/tasks/main.yml b/roles/multiqc/tasks/main.yml
@@ -6,13 +6,6 @@
        force=yes
 
 #Remember to use --upgrade flag if using commit-id
-#Using the python3 env
-- name: Temporarily fix matplotlib at v3.2.2 to get rid of warnings
-  pip:
-    name: matplotlib
-    version: 3.2.2
-    executable: "{{ sw_path }}/anaconda/envs/{{ NGI_venv_py3_name }}/bin/pip"
-
 - name: Install MultiQC
   pip:
     name: "file:{{ multiqc_dest }}"

diff --git a/roles/nf-core/defaults/main.yml b/roles/nf-core/defaults/main.yml
@@ -4,12 +4,14 @@ nextflow_download_url: "https://github.com/nextflow-io/nextflow/releases/downloa
 nf_core_env: "/lupus/ngi/irma3/nf-core-env"
 pipelines:
   - name: methylseq
-    release: 1.5
+    release: 1.6
   - name: ampliseq
     release: 1.1.2
   - name: atacseq
     release: 1.1.0
   - name: viralrecon
     release: 1.1.0
   - name: rnafusion
-    release: 1.2.0    
+    release: 1.2.0
+  - name: nanoseq
+    release: 1.1.0
diff --git a/roles/ngi_reports/defaults/main.yml b/roles/ngi_reports/defaults/main.yml
@@ -1,7 +1,7 @@
 ---
 ngi_reports_repo: https://github.com/NationalGenomicsInfrastructure/ngi_reports.git
 ngi_reports_dest: "{{ sw_path }}/ngi_reports"
-ngi_reports_version: b8d76b0d78d0736ed9ccf3e0c49341f16a2269ee
+ngi_reports_version: 7d796861f3ebbf352f2073fcfa0129730dec83c6
 ngi_reports_log: "/log/ngi_reports.log"
 ngi_reports_log_sthlm: "{{ ngi_pipeline_sthlm_path }}/{{ ngi_reports_log }}"
 

diff --git a/roles/taca/defaults/main.yml b/roles/taca/defaults/main.yml
@@ -9,8 +9,8 @@ statusdb_version: "f21b4124e512aa50babe665f9839fcbc7205bc26"
 
 flowcell_parser_repo: "https://github.com/SciLifeLab/flowcell_parser.git"
 flowcell_parser_dest: "{{ sw_path }}/flowcell_parser"
-flowcell_parser_version: "88a43033009dae455de8c89e00379b8e4a623259"
+flowcell_parser_version: "4ec4331bf6f968bb4a83b00c9c111d87823049de"
 
 taca_repo: "https://github.com/SciLifeLab/TACA.git"
 taca_dest: "{{ sw_path }}/TACA"
-taca_version: e8df5d5d78ce9e6d3946caeeb5f2fdc3ee18492b
+taca_version: d21622638a054082375537f319c5f4a928f0a5c6