Merge pull request #347 from aanil/master

Fix location for ampliseq classifier
NationalGenomicsInfrastructure · May 27, 2020 · 1473bf1 · 1473bf1
2 parents 39be8f2 + a0a98fe
commit 1473bf1
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diff --git a/roles/nf-core/tasks/main.yml b/roles/nf-core/tasks/main.yml
@@ -81,7 +81,7 @@
 - name: Download SILVA classifier data for ampliseq
   get_url:
     url: https://www.arb-silva.de/fileadmin/silva_databases/qiime/Silva_132_release.zip
-    dest: "{{ ngi_resources }}ampliseq/Silva_132_release.zip"
+    dest: "{{ ngi_containers }}/ampliseq/Silva_132_release.zip"
 
 - name: Store tool version in deployment
   lineinfile:

diff --git a/roles/nf-core/templates/site.config.j2 b/roles/nf-core/templates/site.config.j2
@@ -22,5 +22,5 @@ process {
 params.reverseStranded = true
 {% endif %}
 {% if item.0.name=='ampliseq' %}
-params.reference_database = '{{ ngi_resources }}ampliseq/Silva_132_release.zip'
+params.reference_database = '{{ ngi_containers }}/ampliseq/Silva_132_release.zip'
 {% endif %}