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Bionemo demos #2968

Merged
merged 21 commits into from
Oct 4, 2024
Merged

Bionemo demos #2968

merged 21 commits into from
Oct 4, 2024

Commits on Oct 1, 2024

  1. updated bionemo demos to v1.8

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  2. cleaned demos outputs for clarity

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  3. added linces and fixed naming README

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  4. fixed license headers and readme hyperlink

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  5. black fixing code

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  6. isort and flake8 fixes

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  7. addressing PR changes

    @NAEV95
    NAEV95 committed Oct 1, 2024
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  8. removed unrequired infer copy file

    @NAEV95
    NAEV95 authored Oct 1, 2024
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Commits on Oct 2, 2024

  1. Merge branch 'main' into bionemo-demos

    @chesterxgchen
    chesterxgchen authored Oct 2, 2024
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  2. updated other runs files/configs and fixed path in downstream notebook

    @NAEV95
    NAEV95 committed Oct 2, 2024
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  3. fixed fedavg max_epochs setting to 1, removed extra data in taps yaml… 

    …s, fixed column used for each site
    @NAEV95
    NAEV95 committed Oct 2, 2024
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  4. changed fedavg* and local* yamls to have site specific data for tap. … 

    …for sabdab fedavg changed to original ???
    @NAEV95
    NAEV95 committed Oct 2, 2024
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  5. also sabdab local changed dataset.train config to ???

    @NAEV95
    NAEV95 committed Oct 2, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'main' into bionemo-demos

    @chesterxgchen
    chesterxgchen authored Oct 3, 2024
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  2. Merge branch 'main' into bionemo-demos

    @holgerroth
    holgerroth authored Oct 3, 2024
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Commits on Oct 4, 2024

  1. tap fix configurations

    @holgerroth
    holgerroth committed Oct 4, 2024
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  2. update nb, nvflare version

    @holgerroth
    holgerroth committed Oct 4, 2024
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  3. use strict false

    @holgerroth
    holgerroth committed Oct 4, 2024
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  4. use full data for central training of sabdab

    @holgerroth
    holgerroth committed Oct 4, 2024
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  5. Merge pull request #1 from holgerroth/bionemo1.8_updates 

    Bionemo1.8 updates
    @NAEV95
    NAEV95 authored Oct 4, 2024
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  6. Merge branch 'main' into bionemo-demos

    @holgerroth
    holgerroth authored Oct 4, 2024
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