Update to use latest SNOMED CT Major Release 39.0.0

Jenkinsfile

@@ -65,12 +65,12 @@ pipeline {
                                         source docker/vars.local.tests.sh
                                         docker-compose -f docker/docker-compose.yml up -d ps_db
                                         docker-compose -f docker/docker-compose.yml up db_migration
-                                        aws s3 cp s3://snomed-schema/uk_sct2mo_38.2.0_20240605000001Z.zip ./snomed-database-loader/uk_sct2mo_38.2.0_20240605000001Z.zip
+                                        aws s3 cp s3://snomed-schema/uk_sct2mo_39.0.0_20240925000001Z.zip ./snomed-database-loader/uk_sct2mo_39.0.0_20240925000001Z.zip
                                         # As Jenkins is running inside of Docker too, can't just reference the snomed file as a volume as part of the docker run command
                                         # Instead copy the file into a named volume first as a separate docker command
                                         docker volume create --name snomed
-                                        cat ./snomed-database-loader/uk_sct2mo_38.2.0_20240605000001Z.zip | docker run --rm --interactive -v snomed:/snomed alpine sh -c "cat > /snomed/uk_sct2mo_38.2.0_20240605000001Z.zip"
-                                        docker-compose -f docker/docker-compose.yml run --rm --volume snomed:/snomed snomed_schema /snomed/uk_sct2mo_38.2.0_20240605000001Z.zip
+                                        cat ./snomed-database-loader/uk_sct2mo_39.0.0_20240925000001Z.zip | docker run --rm --interactive -v snomed:/snomed alpine sh -c "cat > /snomed/uk_sct2mo_39.0.0_20240925000001Z.zip"
+                                        docker-compose -f docker/docker-compose.yml run --rm --volume snomed:/snomed snomed_schema /snomed/uk_sct2mo_39.0.0_20240925000001Z.zip
                                         docker volume rm snomed
                                     '''
                                 }
@@ -206,7 +206,7 @@ pipeline {
        always {
             sh label: 'Remove exited containers', script: 'docker container prune --force'
             sh label: 'Remove images tagged with current BUILD_TAG', script: 'docker image rm -f $(docker images "*/*:*${BUILD_TAG}" -q) $(docker images "*/*/*:*${BUILD_TAG}" -q) || true'
-            sh label: 'Delete Snomed CT database zip', script: 'rm ./snomed-database-loader/uk_sct2mo_38.2.0_20240605000001Z.zip'
+            sh label: 'Delete Snomed CT database zip', script: 'rm ./snomed-database-loader/uk_sct2mo_39.0.0_20240925000001Z.zip'
             sh label: 'clean up dangling images', script: 'docker image prune -f'
         } // always
       } // post

OPERATING.md

@@ -125,8 +125,8 @@ can be executed against the database using the required environment variables li
 Example usage:
 ```sh
 $ docker run --rm -e PS_DB_OWNER_NAME=postgres -e POSTGRES_PASSWORD=super5ecret -e PS_DB_HOST=postgres -e PS_DB_PORT=5432 \
-    -v /path/to/uk_sct2mo_38.2.0_20240605000001Z.zip:/snomed/uk_sct2mo_38.2.0_20240605000001Z.zip \
-    nhsdev/nia-ps-snomed-schema /snomed/uk_sct2mo_38.2.0_20240605000001Z.zip
+    -v /path/to/uk_sct2mo_39.0.0_20240925000001Z.zip:/snomed/uk_sct2mo_39.0.0_20240925000001Z.zip \
+    nhsdev/nia-ps-snomed-schema /snomed/uk_sct2mo_39.0.0_20240925000001Z.zip
 ```
 
 #### First installation

docker/example.vars.sh

@@ -42,4 +42,4 @@ export SDS_BASE_URL="https://int.api.service.nhs.uk/spine-directory/FHIR/R4/"
 
 export SKIP_DECODE="false"
 #change path for snomedFile fath
-#export SNOMED_CT_TERMINOLOGY_FILE="/mnt/c/Users/yourUserName/yourPath/uk_sct2mo_38.2.0_20240605000001Z.zip";
+#export SNOMED_CT_TERMINOLOGY_FILE="/mnt/c/Users/yourUserName/yourPath/uk_sct2mo_39.0.0_20240925000001Z.zip";

docker/release-scripts/ps-mhs-e2e/vars.sh

@@ -4,7 +4,7 @@
 
 #SECRET KEY VARS
 #User-specific env variables
-export SNOMED_FILE_LOCATION="../uk_sct2mo_38.2.0_20240605000001Z.zip"
+export SNOMED_FILE_LOCATION="../uk_sct2mo_39.0.0_20240925000001Z.zip"
 
 export MHS_SECRET_PARTY_KEY="Y90664-9198273"
 export MHS_SECRET_CLIENT_CERT="-----BEGIN CERTIFICATE-----

docker/start-local-environment.sh

@@ -17,7 +17,7 @@ docker-compose up -d ps_db mhs-adaptor-mock activemq;
 cd ../db-connector
 ./gradlew update
 
-##### comment out if there is no uk_sct2mo_38.2.0_20240605000001Z.zip file
+##### comment out if there is no uk_sct2mo_*.zip file
 cd ../snomed-database-loader
 ./load_release-postgresql.sh "$SNOMED_CT_TERMINOLOGY_FILE"
 

gp2gp-translator/src/integrationTest/resources/e2e-mapping/output-json/PWTP11-output.json

@@ -2692,7 +2692,7 @@
           } ],
           "system": "http://snomed.info/sct",
           "code": "160274005",
-          "display": "No family history diabetes"
+          "display": "No family history of diabetes mellitus"
         } ],
         "text": "No FH: diabetes"
       },

snomed-database-loader/load_release-postgresql.sh

@@ -9,7 +9,7 @@ isMonolith=false
 
 if [ -z ${releasePath} ]
 then
-  echo "Please set the path to zipped SnomedCT RF2 release as the first argument, e.g. ./load_release-postgresql.sh uk_sct2mo_38.2.0_20240605000001Z.zip"
+  echo "Please set the path to zipped SnomedCT RF2 release as the first argument, e.g. ./load_release-postgresql.sh uk_sct2mo_39.0.0_20240925000001Z.zip"
 	exit -1
 fi
 

test-suite/README.md

@@ -76,7 +76,7 @@ If you want to start from a fresh DB, delete the volume with `docker volume rm t
    SDS_API_KEY: "change_if_needed" # used for calculating migration timeouts 
 
    #changepathforsnomedFilepath
-   SNOMED_CT_TERMINOLOGY_FILE: "/snomed/file/location/uk_sct2mo_38.2.0_20240605000001Z.zip"
+   SNOMED_CT_TERMINOLOGY_FILE: "/snomed/file/location/uk_sct2mo_39.0.0_20240925000001Z.zip"
 
    PS_LOGGING_LEVEL: "DEBUG"
 

test-suite/docker/vars.sh

@@ -3,7 +3,7 @@
 # MHS VARS
 #SECRET KEY VARS
 #User-specific env variables
-export SNOMED_FILE_LOCATION="../uk_sct2mo_38.2.0_20240605000001Z.zip"
+export SNOMED_FILE_LOCATION="../uk_sct2mo_39.0.0_20240925000001Z.zip"
 export MHS_SECRET_PARTY_KEY="Y90664-9198273"
 export MHS_SECRET_CLIENT_CERT="-----BEGIN CERTIFICATE-----
 MIIFPTCCAyUCFAKYCULeFVcQCwXCGCiCFVu09NmzMA0GCSqGSIb3DQEBCwUAMF0x