weekly_problems

Weekly programming challenges

Week 1 problems

Unix shell basics The goal of this week's problem is to use what you've learned about understanding usage statements, reading manuals/help menus, identifying NGS file extensions and writing commands to run programs that may be new to you.

Week 3 problems

Part 1: Write a Perl script that will determine the N50 of a genome assembly.

Part 2: Write a Perl script that will parse and summarize a GFF3 annotation file.

Week 4 problems

Part 1: Write a Perl script that will fix broken pairs for paired end Illumina FASTQ files. Create a singleton file for the left over single-end reads.