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New allometric modes #1128
New allometric modes #1128
Commits on Dec 6, 2023
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Add new allometric modes for multiple quantities, plus a few minor im…
…provements. 1. New allometric function for above-ground biomass (allom_amode = 4), which is similar to Chave et al. (2014), except that the exponent for wood density is independent of the one for "tree size" (i.e., DBH*DBH*Height). 2. New allometric function for leaf biomass and crown area (allom_lmode = 4), which uses tree size as the predictor. In the case of leaf biomass, the function also is a function of top-canopy SLA, using a similar formulation as the one for above-ground biomass. 3. Crown depth has now allometric modes too (variable allom_dmode). If allom_dmode=1, crown depth is a constant fraction of height; when allom_dmode=2, crown depth is defined as p1 * Height^p2. Former parameter crown_depth_frac was replaced with parameter allom_h2cd1 (p1), a new parameter allom_h2cd2 was added for the exponent. 4. All allometric mode variables were converted to integers when they are loaded. This avoids converting them to integers every time the allometric function is called. 5. Small edit to CheckParams. The current implementation of allom_hmode=2 is a bit unusual because the minus sign of the Weibull function is incorporated in parameter p2 (meaning that p2 must be negative). Also, instead of aborting the run as soon as an inconsistency in parameters is spotted, the subroutine now continues to check other parameters, and report all the errors before stopping the run. This avoids users submitting FATES multiple times to get one inconsistency at a time.
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Commits on Dec 7, 2023
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Commits on Feb 5, 2024
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updating parameters for cstarvation and allometry crown depth modes i…
…n the xml patch file and cdl
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Merge pull request #9 from rgknox/mpaiao-pr-allom-modes-cstarve-merge
merge in cstarvation params and main, update xml patch file
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Fix crown depth allometry for two stream.
Fix documentation typos and added suggested values for the new allometry (thanks JessicaNeedham)
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Commits on Feb 6, 2024
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Add in parameter file checks and metadata that ECA phosphatase lambda…
… and alpha are incactive
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Merge pull request #10 from rgknox/mpaiao-pr-allom-modes-eca
protections metadata on eca phosphatase
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Commits on Mar 26, 2024
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Commits on Mar 27, 2024
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Merge pull request #11 from rgknox/mpaiao-pr-allom-modes-moreparams
added parameters and merged up
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Commits on Apr 11, 2024
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Merge tag 'sci.1.72.6_api.34.0.0' into mpaiao-pr-allom-modes
Bug fix. Adrianna Foster identified that trunks should be removed from the patch-level variable sum_fuel before being used to calculate rate of spread and fuel consumption.
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Commits on Apr 22, 2024
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Merge tag 'sci.1.72.7_api.34.0.0' into mpaiao-pr-allom-modes
Fixes exact restart bug for satellite phenology mode
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