Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add "Raman spatial dimensionality" #37

Closed
wants to merge 23 commits into from
Closed
Changes from 8 commits
Commits
Show all changes
23 commits
Select commit Hold shift + click to select a range
b83127d
Update vibso_classes.tsv
Feb 10, 2023
368c972
Update vibso_classes.tsv
Feb 10, 2023
bfeb85e
Update vibso_classes.tsv
Mar 13, 2023
04f811f
Merge branch 'Zack-83-patch-1' of https://github.com/NFDI4Chem/Vibrat…
StroemPhi Mar 14, 2023
47ecedc
Merge branch 'main' into Zack-83-patch-1
StroemPhi Mar 14, 2023
952b948
Update vibso_classes.tsv
Feb 10, 2023
cf08848
Update vibso_classes.tsv
Feb 10, 2023
d0f0591
Update vibso_classes.tsv
Zack-83 Jul 4, 2023
ce907ed
Update vibso_classes.tsv
Zack-83 Jul 26, 2023
a3b00d2
Update vibso_classes.tsv
Zack-83 Jul 26, 2023
4273bf2
adjusted definitions
Zack-83 Jul 26, 2023
af73904
Merge branch 'Zack-83-patch-1' of https://github.com/NFDI4Chem/Vibrat…
StroemPhi Aug 3, 2023
9c74d41
assign IDs and the correct super classes
StroemPhi Aug 3, 2023
8f3b30f
adding axioms for Raman mapping, Raman mapping specification and Rama…
StroemPhi Aug 3, 2023
abae988
forgot the brackets around the subclassOf axioms
StroemPhi Aug 3, 2023
268f0d0
adding missing quotation mark in axioms
StroemPhi Aug 3, 2023
0bf23bd
Merge branch 'main' into Zack-83-patch-1
Zack-83 Aug 14, 2023
1028e9b
Merge branch 'Zack-83-patch-1' of https://github.com/NFDI4Chem/Vibrat…
StroemPhi Aug 15, 2023
fb2fd48
Merge branch 'Zack-83-patch-1' of https://github.com/NFDI4Chem/Vibrat…
StroemPhi Aug 16, 2023
3796008
Raman_spectroscopy_T-Box.drawio aktualisiert
StroemPhi Aug 16, 2023
ca4d614
better arangement
StroemPhi Aug 30, 2023
ee7619f
Merge branch 'Zack-83-patch-1' of https://github.com/NFDI4Chem/Vibrat…
StroemPhi Sep 27, 2023
a1635e2
Update src/templates/vibso_classes.tsv
Zack-83 Oct 13, 2023
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 2 additions & 3 deletions src/templates/vibso_classes.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -30,8 +30,7 @@ obo:VIBSO_0000023 point distance Y sampling pace in the Y direction|sampling ste
obo:VIBSO_0000024 point distance Z sampling pace in the Z direction|sampling step in the Z direction|voxel distance in the Z direction|vertical mapping distance|axial mapping distance https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 A setting datum that specifies the equal distance which the incident light beam will moved along the focal axis within the region of interest, when performing a spatially resolved spectroscopy. owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 10 µm point distance Z = (region of interest depth) / (number of measurements Z)
obo:VIBSO_0000025 number of measurements X number of points in the X direction|number of points per line https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 A setting datum that specifies how many equally configured measurements of a sample are to be performed along the X-axis of a certain region of interest. Together with the point distance X, this setting defines the region of interest width. owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 50 number of measurements X = (region of interest width) / (point distance X)
obo:VIBSO_0000026 number of measurements Y number of points in the Y direction|number of lines per layer https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 A setting datum that specifies how many equally configured measurements of a sample are to be performed along the Y-axis of a certain region of interest. Together with the point distance Y, this setting defines the region of interest breadth. owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 100 number of measurements = (region of interest breadth) / (point distance Y)
obo:VIBSO_0000027 number of measurements Z number of points in the Z direction|number of layers per acquisition https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 "A setting datum that specifies how many equally configured measurements of a sample are to be performed in the vertical direction (on the Z-axis) of a certain region of interest.
Together with the focal point distance, this setting defines the region of interest depth." owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3956 10 number of measurements Z = (region of interest depth) / (point distance Z)
obo:VIBSO_0000027 number of measurements Z number of points in the Z direction|number of layers per acquisition https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 "A setting datum that specifies how many equally configured measurements of a sample are to be performed in the vertical direction (on the Z-axis) of a certain region of interest.Together with the focal point distance, this setting defines the region of interest depth." owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3956 10 number of measurements Z = (region of interest depth) / (point distance Z)
Zack-83 marked this conversation as resolved.
Show resolved Hide resolved
obo:VIBSO_0000028 Raman mapping specification Raman imaging specification|Raman acquisition specification https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 An objective specification that defines the spatial coverage of a Raman spectroscopy experiment, by determining whether to produce a Raman image of the region of interest (ROI) from a single acquisitions or instead from multiple mapped scans. owl:Class objective specification|(is_specified_input_of some 'Raman mapping') ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955
obo:VIBSO_0000029 Raman single-point mapping specification https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman mapping specification in which the region of interest (ROI) is covered at once, by focusing the laser beam to cover the whole ROI. owl:Class Raman mapping specification ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 The spatial resolution of a Raman image produced with this mode is determined by the magnification of the optics in the system and the size of the elements in the detector.
obo:VIBSO_0000030 Raman point-by-point mapping specification https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman mapping specification in which the region of interest (ROI) is scanned sequentially, by displacing a focused steady laser beam narrower than the ROI at different locations on the sample within an equally spaced grid spanning the ROI. owl:Class Raman mapping specification ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 The spatial resolution of a Raman image produced with this mode is determined by a combination of the laser focus area and the spacing between the acquisition points in the scanning grid.
Expand All @@ -43,4 +42,4 @@ obo:VIBSO_0000035 Raman horizontal 1D map https://github.com/NFDI4Chem/Vibratio
obo:VIBSO_0000036 Raman vertical 1D map https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman map defined by a 1-dimensional array of points parallel to the laser beam. owl:Class Raman map ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955
obo:VIBSO_0000037 Raman horizontal 2D map https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman map defined by a 2-dimensional array of points orthogonal to the laser beam. owl:Class Raman map ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955
obo:VIBSO_0000038 Raman vertical 2D map https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman map defined by a 2-dimensional array of points parallel to the laser beam. owl:Class Raman map ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955
obo:VIBSO_0000039 Raman 3D map https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman map defined by a 3-dimensional array of points. owl:Class Raman map ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955
obo:VIBSO_0000039 Raman 3D map https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/28 A Raman map defined by a 3-dimensional array of points. owl:Class Raman map ORCID:0000-0002-1595-3213|ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955