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fix add collectmultiplemetrics output to multiqc
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weizhu365 committed Dec 24, 2024
1 parent dbb56b6 commit da358d6
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion workflow/rules/bam_qc.smk
Original file line number Diff line number Diff line change
@@ -61,4 +61,7 @@ if config["bam_qc"]["collectmultiplemetrics"]["enable"]:
'''

optional_output.append( expand(output_dir+"/collectmultiplemetrics/{subj}/sequencingArtifact.pre_adapter_summary_metrics.txt", subj = subjs))
qc_output.append( expand(output_dir+"/collectmultiplemetrics/{subj}", subj = subjs))

# qc_output.append( expand(output_dir+"/collectmultiplemetrics/{subj}", subj = subjs))
qc_output.append( expand(output_dir+"/collectmultiplemetrics/{subj}/sequencingArtifact.pre_adapter_summary_metrics.txt", subj = subjs))

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