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v1.6.0

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@jaamarks jaamarks released this 13 Aug 17:59
· 154 commits to default since this release

What's Changed

  • 287 dynamically adjust minimum maf for hwe calculation and add option to set hwe p value threshold by @kliao12 in #300
  • fix checkpoint to check populations for # controls by @kliao12 in #301
  • switch snp and call rate filters by @kliao12 in #305
  • bugfix: is_unexpected_replicate data missing in QC_Report.xlsx by @jaamarks in #304
  • bugfix: retrieve additional missing data from QC_Report.xlsx by @jaamarks in #307
  • gtc to ped (Issue 222) by @carynwillis in #309
  • Update branch by @kliao12 in #311
  • 302 skip merging graf king and plink results to make the qc pipeline more efficient by @kliao12 in #310

Full Changelog: v1.5.1...v1.6.0