update urls, phenotype_of predicate for mydisease phenotypicFeature -…

…> Disease
NCATSTranslator · Apr 6, 2021 · ee84805 · ee84805
1 parent d3ca823
commit ee84805
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Showing 7 changed files with 10 additions and 13 deletions.
diff --git a/onehop/test_triples/KP/Service_Provider/MyChem.info_API.json b/onehop/test_triples/KP/Service_Provider/MyChem.info_API.json
@@ -1,6 +1,5 @@
 {
-    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
-    "smartAPI_ID": "8f08d1446e0bb9c2b323713ce83e2bd3",
+    "url": "https://api.bte.ncats.io/v1/smartapi/8f08d1446e0bb9c2b323713ce83e2bd3/query",
     "TRAPI": true,
     "edges": [
         {

diff --git a/onehop/test_triples/KP/Service_Provider/MyGene.info_API.json b/onehop/test_triples/KP/Service_Provider/MyGene.info_API.json
@@ -1,6 +1,5 @@
 {
-    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
-    "smartAPI_ID": "59dce17363dce279d389100834e43648",
+    "url": "https://api.bte.ncats.io/v1/smartapi/59dce17363dce279d389100834e43648/query",
     "TRAPI": true,
     "edges": [
         {

diff --git a/onehop/test_triples/KP/Service_Provider/Ontology_Lookup_Service_API.json b/onehop/test_triples/KP/Service_Provider/Ontology_Lookup_Service_API.json
@@ -1,6 +1,5 @@
 {
-    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
-    "smartAPI_ID": "1c056ffc7ed0dd1229e71c4752239465",
+    "url": "https://api.bte.ncats.io/v1/smartapi/1c056ffc7ed0dd1229e71c4752239465/query",
     "TRAPI": true,
     "edges": [
         {

diff --git a/onehop/test_triples/KP/Service_Provider/OpenTarget_API.json b/onehop/test_triples/KP/Service_Provider/OpenTarget_API.json
@@ -1,6 +1,5 @@
 {
-    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
-    "smartAPI_ID": "542ba165e1b4227854cf7c0a8addcc79",
+    "url": "https://api.bte.ncats.io/v1/smartapi/542ba165e1b4227854cf7c0a8addcc79/query",
     "TRAPI": true,
     "edges": [
         {

diff --git a/onehop/test_triples/KP/Service_Provider/OpenTarget_README.md b/onehop/test_triples/KP/Service_Provider/OpenTarget_README.md
@@ -10,4 +10,6 @@ parameters:
 One of the answers should be EVEROLIMUS, which has
 ```
 data.drug.id: "http://identifiers.org/chembl.compound/CHEMBL1908360"
-```
+```
+
+Note: BTE TRAPI is currently having an issue. The raw output of this API is very redundant, and it seems that this is causing issues with the results section of the response (nodes and edges are fine). 
diff --git a/onehop/test_triples/KP/Service_Provider/README.md b/onehop/test_triples/KP/Service_Provider/README.md
@@ -1,4 +1,4 @@
-The JSON files assume that these APIs will be queried through BTE's TRAPI endpoint for querying individual SmartAPIs. They therefore include the url for the BTE endpoint, and the SmartAPI ID for the actual SmartAPI. The edge to the answer/object node should have an "api" attribute, with the name of the SmartAPI as the value. 
+The JSON files assume that these APIs will be queried through BTE's TRAPI endpoint for querying individual SmartAPIs (accessible through the URLs provided). 
 
 Notes:
 - tests are also described as queries that can be made directly to the API, in the additional README files. Notice that many API endpoints do not handle curies (ID prefixes) or predicates. The format of these queries is specified by the x-bte-annotated endpoint in the SmartAPI registry file. 

diff --git a/onehop/test_triples/KP/Service_Provider/mydisease.info_API.json b/onehop/test_triples/KP/Service_Provider/mydisease.info_API.json
@@ -1,6 +1,5 @@
 {
-    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
-    "smartAPI_ID": "671b45c0301c8624abbd26ae78449ca2",
+    "url": "https://api.bte.ncats.io/v1/smartapi/671b45c0301c8624abbd26ae78449ca2/query",
     "TRAPI": true,
     "edges": [
         {
@@ -48,7 +47,7 @@
         {
             "subject_category": "biolink:PhenotypicFeature",
             "object_category": "biolink:Disease",
-            "predicate": "biolink:related_to",
+            "predicate": "biolink:phenotype_of",
             "subject": "HP:0000224",
             "object": "MONDO:0012107"
         },